K33920

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33920

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33920

Determination of introduced cDNA(s)

  • J023023E12 - Rice Full-length cDNAs - Original: J023023E12

    full reading [+] show sequence

    Nucleotide sequence: J023023E12 - full reading 
    GGAGCAGTAC ACCCACGTCT ACTCCCGTTA ACCCCGTGTA TAGACTCACT 
    GACACGCCGG GCCCATCCCC GACCTCCTCC GTCCACGTCA GCAACGTCAC 
    GTGGCGCGCC CGCCACGCTG TCCCCATTGG CTACTTGCGC CCTACTCCGC 
    CTACTCCCCT CATCTCCTTC CTCCTCCTCC GCCGCCGCCG CCACCACTAC 
    TAAAACCCTA GCTGCTCGCC TCGCCCACGC CCTCGCTCGC CTCGCCTGAT 
    CCCGCCGCGT CGTAGCAGCA GGGCGGAGCC ATGTCGTCCG GGAAGGGAGG 
    TGGAGGCGGC GGCAAGGGAG GCGGAGGGAA GAAGAAGGAG GTGAAGAAGG 
    AGACGAAGCT CGGGATGGCG TACAAGAAGG ATGACAACTT CGGGGAGTGG 
    TACTCCGAGG TTGTCGTTAA CAGTGAAATG ATCGAGTACT ATGACATATC 
    CGGTTGTTAT ATCTTGAGGC CATGGGCGAT GGAGATCTGG GAATTGCTTA 
    AAGAATTCTT TGATGCAGAA ATAAAAAAGC TGAAGCTGAA ACCTTATTAT 
    TTCCCATTGT TTGTCACTGA GAATGTCCTA CAGAAGGAGA AAGACCACAT 
    TGAGGGCTTT GCACCAGAGG TAGCATGGGT CACTAAATCA GGAAAATCTG 
    ATCTGGAAGC TCCTATCGCA ATCCGTCCTA CAAGTGAGAC TGTCATGTAT 
    CCATACTTCT CCAAATGGAT AAGAAGTCAT CGGGACTTAC CTTTGAGGTG 
    TAACCAGTGG TGTAACGTCG TGCGATGGGA GTTTAGCAAT CCAACTCCAT 
    TCATAAGGAG CCGTGAGTTC CTTTGGCAAG AAGGGCATAC AGCTTTTGCA 
    ACTAAAGAGG AGGCTGACGA AGAGGTTCTC CAAATTTTGG AACTCTACCG 
    AAGGATTTAT GAAGAATTTT TAGCAGTTCC AGTTTCTAAA GGGAGGAAAA 
    GTGAGATGGA AAAATTTGCT GGTGGACTGT ATACAACAAG TGTTGAGGCC 
    TTCATTCCAA ACACAGGACG TGGTGTACAA GGGGCAACAT CACATTGTCT 
    TGGTCAAAAC TTTGCAAAGA TGTTTGATAT CACTTTTGAG AATGATAAGG 
    GCTCAAGATC CATGGTGTGG CAGAACTCTT GGGCATACAC CACCCGCTCG 
    ATTGGGGTGA TGGTGATGAC ACACGGAGAT GACAAAGGTT TAGTGCTTCC 
    ACCAAGGGTG GCACCTCTGC AGGTCATTGT TATTCCTGTT CCATACAAAG 
    ATGTTGACAC AACAGCTATT GTAAACGAAT GCAAAAAGAC TGTTGAGACA 
    CTGGAGAAAG CTGGTATTCG AGCAGACTTG GATACCCGCG AAAACTATTC 
    TCCAGGATGG AAGTATTCCC ACTGGGAGAT GAAAGGCGTT CCTCTAAGAA 
    TTGAGATAGG TCCAAAAGAT ATGGCAAACA ATCAGGCCCG TGTTGTTAGG 
    CGAGACAATG GTGCAAAAGC TGATATTCCT ACGGCTGACT TGGTTGAGAA 
    AGTTAATGGG TTACTTGATG AGGTTCAGAA AAACTTGTTT GAGACGGCGA 
    AACAAAAGAG AGATGCCTGC CTTAAGGTTG TTAACACCTG GGATGAATTC 
    ATAGTGGCTC TGAATGACAA AAAATTGATC CTGGCTCCAT GGTGTGATGA 
    AGAGGAAGTT GAGAAGGATG TGAAGGCTCG GACAAAAGGT GACCTGGGAG 
    CTGCCAAGAC ATTGTGTACA CCATTTGAAC AGCCAGATCT CCCAGAAGGA 
    ACCACATGCT TTGCTTCTGG AAAGCCTGCG AAGAAATGGT CATTCTGGGG 
    CCGCAGCTAT TGATCTGTAA CGGATCTCGG TTGTGATCAT TCATTCCTGC 
    TGGCGAAGCC GTTGATTCAC CATAGACATG TATTGCAGTT TTCATACTAG 
    CAAAGCATGA TACACATACA TCTATTTACC GTGCAGTTTT GCTGCTTGTC 
    AGAAATCTTG ACATTGGAAT GTTTAAGTAA CATCTTGTTT GGTTC

    Gene models with high sequence identity

    1. AT3G62120.2 [+] show detail - Class II aaRS and biotin synthetases superfamily protein
      E-value: 0; Score: 802.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 1.7e-105
    Gene3D Anticodon-binding 4e-30
    Gene3D Prolyl-tRNA synthetase, class II, C-terminal 8.8e-10
    ProfileScan Aminoacyl-tRNA synthetase, class II, conserved domain 19.915
    HMMTigr Prolyl-tRNA synthetase, class IIa, prokaryotic-type 1.1e-221
    HMMPanther Prolyl-tRNA synthetase, class IIa, prokaryotic-type 1.7e-282
    HMMPanther TRNA SYNTHETASE-RELATED 1.7e-282
    HAMAP Prolyl-tRNA synthetase, class IIa, prokaryotic-type 38.295
    FPrintScan Prolyl-tRNA synthetase, class IIa, conserved region 1.6e-08
    FPrintScan Prolyl-tRNA synthetase, class IIa, conserved region 1.6e-08
    FPrintScan Prolyl-tRNA synthetase, class IIa, conserved region 1.6e-08
    FPrintScan Prolyl-tRNA synthetase, class IIa, conserved region 1.6e-08
    superfamily Class II aaRS and biotin synthetases 2e-84
    superfamily Anticodon-binding 5.6e-35
    superfamily Prolyl-tRNA synthetase, class II 3.3e-19
    HMMPfam Prolyl-tRNA synthetase, class II, C-terminal 9.5e-24
    HMMPfam Anticodon-binding 2.3e-20
    HMMPfam Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain 3.1e-19

    See the detailed result >

    AT3G62120.2

    Model type
    Protein coding
    Short Description
    Class II aaRS and biotin synthetases superfamily protein
    Computational Description
    Class II aaRS and biotin synthetases superfamily protein; FUNCTIONS IN: proline-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: prolyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain (InterPro:IPR002314), Prolyl-tRNA synthetase, class IIa, prokaryotic-type (InterPro:IPR004499), Prolyl-tRNA synthetase, class II, C-terminal (InterPro:IPR016061), Anticodon-binding (InterPro:IPR004154), Prolyl-tRNA synthetase, class II (InterPro:IPR017449), Prolyl-tRNA synthetase, class IIa, conserved region (InterPro:IPR002316), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195); BEST Arabidopsis thaliana protein match is: Class II aaRS and biotin synthetases superfamily protein (TAIR:AT5G52520.1); Has 9240 Blast hits to 8990 proteins in 2633 species: Archae - 270; Bacteria - 6522; Metazoa - 295; Fungi - 194; Plants - 105; Viruses - 0; Other Eukaryotes - 1854 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR