K34024

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K34024

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K34024

Determination of introduced cDNA(s)

  • J013149C21 - Rice Full-length cDNAs - Original: J013149C21

    full reading [+] show sequence

    Nucleotide sequence: J013149C21 - full reading 
    GAGGTGGAGG GGGAGAGCCA TTTCTTCCTC TTCTTCTCTC GCCGGCGGCA 
    ACCCTGCGAG CCTGCAGTGA CGCCGCCGCC GCCGCTGCGT CGGTTCTGAG 
    TTTGCTTCGT CTCCGGGCTC GCTGGATTGA GCTTTGTCAA GAGCAGAAGA 
    AGTCATGTTT AGCTTTAGGA AAAAGCATGC CTCTCGCTTC GATTCAGATG 
    ACATTGAGCA ACAAGAAGCA AAGATCCAAG AGCTCAGAGC TGCACTTGGG 
    CCGTTGTCTT CCTCTGGTAA GAAATATTGT ACTGAAGCAT GCTTGAGAAG 
    ATATCTAGAG GCCCGTAACT GGAATGTTGA TAAGTCCAGA AAAATGTTGG 
    AAGAAAGTCT TAAGTGGAGA ACAGCTTACA GGCCAGAAGA CATTCGTTGG 
    CCCGAGATTT CTGTTGAATC AGAAACAGGT AAAATGTACA GAGCAAGTTT 
    TGTAGATAGA GAGGGGAGAA CTGTCGTCAT TATGAGACCC GCAAAGCAGA 
    ACACATCGTC CCATGAAGGG CAGGTACGGT TTCTTGTATA TACGTTGGAG 
    AATGCAATCC TCAGCTTGCC TGAAGATCAA GAGAAAATGG TTTGGTTGAT 
    AGATTTCACA GGATGGACCT TGGCAAATGC GACACCCATA AAGACTGCCA 
    GAGAATGTGC AAATATCCTG CAAAATCATT ACCCTGAGAG GTTGGCTATC 
    GGGATCCTGT TTAATCCCCC CAAAGTATTT GAGGCTTTTT GGAAGGTTGT 
    CAAACATTTC CTTGACCCAA AATCAATCCA GAAGGTGAAT TTTGTATACC 
    TGAAGAACGA GGAGAGCATG AAGATCCTGC ACAAGTACAT TGATCCAGAA 
    GTCCTTCCTG TAGAGTTTGG AGGAAAGAAC AATGTGGTGT ACAGCCATGA 
    GGAGTACTCC AAGTTGATGG TGAAAGATGA CATTAAAATG GCAAGCTTTT 
    GGGCATCGGA TACAAAAACT GACCATGTTA ACAAAGTCAT TAACGAGCAC 
    TCCGTCCCCG AGGTTACGCA ACAGTCGTCG CTGGTGGCTG CGAAAGCGAG 
    CTGAGGAGTA TCAATCTGCC ATGATGGGGG TTATAAACCA AAACAAATTC 
    TAAAAGACGA TGTAGAGGAC TATTGGTATG TTCATGATAA ATAAATGGAA 
    CTGCAGAATA ATTTACCTGG GATGTTACAG CTCCATGTAT TACTGCTAAA 
    AATCTTTAGC TAAAGACCAG TCTACAAAAA ATCTTTAGCT AACCGACCTG 
    AGCTACAGAT TCAGAGATTA TAGCGAGTTC ATTACAAACT ATCACCAGTA 
    AAAGGAAATA ACAGACTTTA ATTTGCCCGG TATT

    Gene models with high sequence identity

    1. AT1G75170.2 [+] show detail - Sec14p-like phosphatidylinositol transfer family protein
      E-value: 1e-92; Score: 337.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Cellular retinaldehyde-binding/triple function, C-terminal 20.992
    HMMPanther PHOSPHOGLYCERIDE TRANSFER PROTEIN-RELATED 1.3e-131
    HMMPanther RETINALDEHYDE BINDING PROTEIN-RELATED 1.3e-131
    HMMSmart Cellular retinaldehyde-binding/triple function, C-terminal 3.9e-47
    HMMPfam Cellular retinaldehyde-binding/triple function, C-terminal 2.8e-33
    HMMPfam Cellular retinaldehyde-binding/triple function, N-terminal 1.6e-09
    superfamily Cellular retinaldehyde-binding/triple function, C-terminal 1.1e-47
    superfamily Phosphatidylinositol transfer protein-like, N-terminal 1.7e-16
    Gene3D Cellular retinaldehyde-binding/triple function, C-terminal 5.1e-47

    See the detailed result >

    AT1G75170.2

    Model type
    Protein coding
    Short Description
    Sec14p-like phosphatidylinositol transfer family protein
    Computational Description
    Sec14p-like phosphatidylinositol transfer family protein; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT4G36640.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR