K34028

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K34028

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K34028

Determination of introduced cDNA(s)

  • J013037H08 - Rice Full-length cDNAs - Original: J013037H08

    full reading [+] show sequence

    Nucleotide sequence: J013037H08 - full reading 
    GGTGATGTTT GAGGCGCAAA AACAGTATCC CCCTTAACAC CAGTTATAAT 
    ATAAAGGCGG ACTCTTTGCT GCCACATTGA AACTTCAATA TAATCTTCCA 
    ATTTTAAAAG CTTCGAAACA TCACACCCAG TTTCCTCTAG AACTTCTCTA 
    ACAGCACATG TATGATCTTC TTCATCTTTA CTCCTCTTTC CACGAGGAAA 
    ACTCCAGCTG GCGCTAGACT TCCATCCCTT CACAAGCAAG CACTTCTCGT 
    AGGTGTCATC GAGGATGATG GCGCCGCAGA CAGGGACACG GAACTTATAG 
    TGAGTGAAAT CCTTGTAAAT GTCATCAAGG TGCGCGCGGT ATGGCCTGAG 
    CGCAGCACAG CTATTGAACA TGAGCGTAGT GAAGTCCTTG AAGGAGAGCG 
    ACTTGAGGGA GGGGTTGTGC TCGACGGAGT TGTCCTCGTA GAACCAGTGC 
    GCCTGCTCCA GCAAGAACAG GATCCGCTCG AACGACTCCA AATCCTCCTT 
    GGGCACGTTG AGCACGAAGC GGCTGCAGAG ATCGTCGAGA AGCTCCTGCG 
    GCGGCAGCTG CCCCCTCGAC GACGACCGGT TGAGCCCCCC GCCGCCCGCC 
    ATCGCCATCC ACCGCCGCCG CCGCGCCGCC CCCGCTCCCA CCCCTCCTCT 
    CTCCCTCTCT CGCTCGCCTC CGGAATCCAC TGCCTCCGCC TCCCAAGAAG 
    GCGAACCCTA TTCCGCCCCC GATTCTCCCG GAGCGGGGGG CCGGACTCCC 
    GTTGCGCGAT TGGGCGGTGA AACCCGAATC CCCCTGCGGG CGGCGGCGTC 
    CGTTTCTCAT CTACCGTCGG CGTTGGGGGG GACGCCGCCC CATGGGCCGG 
    TCGCCAGCGA TATATCACTA TCAGCTCATC GACCGGCGGA AAGGGCTTGG 
    ATAAAATCTT ATTGCAAATT TCCCCTTGTA CATGTAACAT CACATGTAAT 
    TTCTATTAAA AATGACTTCA CTCAATAAAG TTGTTTCCAA TGGAGATACA 
    AGGTCAATGT TGCCAAATAA AGTCACAGCA TTGAATCCCA ACGCAGCAGA 
    ATTTGTACCT TCATGTATTA GACCATCTTT TGAGAGTAGC GCTGTCTCAG 
    ATGTAAGTAA GGCAGATCTT AGGGCTTCTG GGAAAACTAT CCTAGATAGG 
    TCCGAGTCAT CAAAGTCAAA TAACTCGGAT GATGAGGCAC ACCAGTTTTG 
    GCGTAAGCAG CTTCCTGATG ACATTATTCC AGACTTCAGT TTTGAGAAAA 
    TTGAACAAGA ACCTGAAGAA TTGTCTCTTG CTGGATTATC CTTGAATGCA 
    CCCCCTTTCT ATGGAACAAC AGCTAGCCGC TTTTCAAGAG AGCATGATTT 
    ATCTTCTCAA GCTAACAAGA GCCTGGAACT GGGGCTTACC AGTTTACTTT 
    ATGAAGATAA TTCACAAGCA TCGTTTCCAA CTATGGGTTC AAGCAATTGG 
    GAGCAAAATT TTGTAGGGGA TCTCCATTTT ACGAATGGAA ATCAGGGCCT 
    TCATTATGAT TCTGAAAGTG CTGCAGGCTT TTCTGACAGT TTTGCTAGCG 
    ATTATGCTGC AGCAACAGAC GATGTTCTTG ACCCCCTAGC GTATTTAGCT 
    TCACAGTTTC CTGATTTTTC ATCAGAGAGC CTTGCAGAGC TGTACTATGC 
    TAATGGATGT GACTTCAACC ATACTATTGA AATCCTCACC CAGCTAGAGA 
    TGCAAGTTGA TGCTACCTCC AATCCAACTC TGACCCCCAG GACACCAAAC 
    TTTAGCACAG GGGACTTCCC CGCACTGCCA ACAGTTGAAG ACCAAAATGG 
    TTTTTCCAAA GGCAATGCAG ATATTCTAAG CATCTTCAAT GGACGCAGCT 
    CACCCTCTGT ATCTACTGGT ACTGGTGATT TTGTTTCAGC TGTTCGCAAA 
    CTTGCATCGC AAAATTCTGG CCATTGGAAG TATAAGAAAG GTCCTGAATA 
    CGGTAATGGT GTTTCAACTG TTTCTGTACC CAAGCAGTAC AGTTCTACGA 
    CCAAAACATC TTCTGGAAAC AAGTTTCAAA GTGTTAGCAG TGCAAGAGCT 
    GCTCCATGGC TCGAAACTGG AGATGCAGTA GCAAACATGT ACTCAGAATC 
    AAGGGGAGAA GCCCGTGATT TTGCCCGCAT CCGAAATGCA TGTTTTGAGC 
    AGGCTAGACA GGCTTACCTG ATTGGCAACA AAGCTCTAGC CAAGGAATTG 
    AGTATGAAGG GACAGACATA TAACACACAA ATGAAAGCAT CTCATGAGAA 
    AGCAAGAGAA GCTATTTATC GACAGAGGAA CCCATCTTCG CAACGAGGGA 
    GCGACCGTCT GATCGATCTA CATGGTCTCC ATGTGAACGA AGCAATCCAT 
    ATACTTAAGG TCGAGCTCGG TACTCTTAAG AGCACCGCGA GGGCTACAGG 
    TGAGAGGATG CAAGTCATGA TATGTGTCGG GACAGGTCAT CACACCAAGG 
    GTTCTCGCAC CGCCAGGCTG CCCATCGCCG TCGAGCAGTT TCTTCTGGAG 
    GAAGGCCTCC ACTACACGCA GGCACAACCT GGTTTGCTCC GTGTTGTGGT 
    GTTCTAACAT CTCTTAGGTC AGCAGCACGA AGAAAAAAGA AGCAAAACAA 
    AAAAAGGAGA AAGAGATGTA GGGAAAAGAA AAACCTAAAA AAAATGGCCG 
    CTGTTGCAGC ACTGTAATTT TCTTGTAGTT GTATATTAAA AGAGGCAGCA 
    GGAGAATAGC CTGACAACAG AATACAGTGT AAAATTATAC ATAGCTTCAT 
    TCAATTCACA TTCCATTCC

    Gene models with high sequence identity

    1. AT2G26280.1 [+] show detail - CTC-interacting domain 7
      E-value: 4e-108; Score: 389.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily NUDIX hydrolase domain-like 5.4e-06
    HMMPanther SUBFAMILY NOT NAMED 4e-45
    HMMPanther FAMILY NOT NAMED 4e-45
    HMMPfam Domain of unknown function DUF1771 1.1e-13
    HMMPfam Smr protein/MutS2 C-terminal 3.8e-08
    HMMPfam Ataxin-2, C-terminal 0.00013
    HMMPfam Dcp2, box A 2.4e-31
    ProfileScan Smr protein/MutS2 C-terminal 17.222
    HMMSmart Smr protein/MutS2 C-terminal 1e-12

    See the detailed result >

    AT2G26280.1

    Model type
    Protein coding
    Short Description
    CTC-interacting domain 7
    Curator Summary
    smr (Small MutS Related) domain-containing protein mRNA, complete cds
    Computational Description
    CID7; FUNCTIONS IN: damaged DNA binding, protein binding, ATP binding; INVOLVED IN: mismatch repair; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Smr protein/MutS2 C-terminal (InterPro:IPR002625), Region of unknown function DUF1771 (InterPro:IPR013899); BEST Arabidopsis thaliana protein match is: PRLI-interacting factor, putative (TAIR:AT5G58720.1); Has 309 Blast hits to 309 proteins in 103 species: Archae - 0; Bacteria - 0; Metazoa - 71; Fungi - 126; Plants - 79; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR