K34050

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K34050

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K34050

Determination of introduced cDNA(s)

J023079L19 - Rice Full-length cDNAs - Original: J023079L19

full reading [+] show sequence

GCCGTAGGTA CTCGTACTAC TCCAATTCTT TCTCTCGCCT ACGCCTTCCT 
CCCAATCTTG TTGTTTCGGC GGCGGCGGCG GCGGCGGCGG TGAGGGAGAT 
GGCGGCGGAG AGGAAGGACG TGGGCATTCT CGCCATGGAC ATCTACTTCC 
CGCCCACCTG CGTGCTCCAG GACGAGCTGG AGAATCATGA TGGCGTGAGC 
AAAGGGAAGT ACACCATTGG GCTTGGACAG GATAGCATGG CCTTTTGCAC 
TGAAGTGGAA GATGTTATTT CCATGAGCTT GACAGTAGTG AAGTCACTCC 
TGGAAAACTA TAAGATTGAT CCAAAATGTA TTGGACGTTT GGAAGTTGGC 
AGTGAAACAG TAATAGACAA GAGCAAGTCT ATAAAAACAT GGCTGATGCA 
AATATTTGAG GAATGCGGTA ATACTGACAT TGAAGGAGTT GACTCCTCAA 
ATGCATGCTA CGGTGGAACA GCTGCTTTAT TTAATTGTGT TAATTGGGTC 
GAGAGCAACT CATGGGATGG ACGTTATGGG CTTGTTGTTT GCACAGACAG 
CGCGGTTTAC GCTGAAGGTC CGGCTCGTCC AACCGGTGGT GCAGCTGCTA 
TTGCAATGTT GATTGGACCA AATGCTCCAG TTTCTTTCGA AAGCAAGTAT 
AGAGGATCTC ATATGGCACA TGTCTATGAC TTTTACAAGC CTGATCTTGC 
TAGTGAATAC CCGGTGGTCG ATGGAAAGCT ATCACAGACA TGCTATCTCA 
TGGCATTAGA TTCCTGCTAC AATGTCTTCT GCAAAAAGTA TGAAAAGCTT 
GAGGGAAAGC AATTTTCTAT TCATGATGCA GACTATTTTG TATTTCACTC 
CCCATACAAC AAGCTTGTGC AGAAGAGCTT TGCACGCCTA TACTACAACG 
ATTTTCTGAG AAAATGCAGC ACGGTGGAAG ATGGATCAAG AGAAAAACTG 
GAGCCTTATT CAGGTTTGTC ATCCGAGGAA AGCTACCAGA GTAGAGAACT 
TGAAAAGGTT TCTCAGCAAG TTGCGAAGCA CCTCTATGAT TCAAAGGTTC 
AACCAACTAC ATTAATCCCG AAACAAGTCG GGAATATGTA CACAGCGTCT 
CTATATGCTG CTTTGGCATC AGTGATGCAT AACAAAAATG AAACTCTGGC 
AGGCCAAAGG ATTGTCATGT TCTCATACGG CAGTGGCTTG ACATCAACAA 
TGTTCTCTTT CAAGATCAAT GAAGGCCAGC ATCCATTCAT CCTATCAAAC 
ATTGCAGGCA TACTGGATGT CTCCAAGAAA CTGGAGTCCA GGCATGTGGT 
TGCGCCGGAG AAGTTCGTGG CGGCGCTGAA GCTGATGGAG CACCGGTACG 
GCGCCAAGGA TTTCACGACG AGCCAGGACA CGAGCCTGCT CGCTCCAGGC 
ACCTACTACC TCACCCACGT CGACTCCATG TACAGGAGGT TCTACGCCGT 
CAAAGGTCAA GCCGTCACCG AAGTGTCCAA TGGCCATTGA AAAAATTGTG 
TTGTGATGTG TGGTTCATTC AACCTGAAGC TGCAATAAGC CAACGGCATA 
GAGGGTTCAG GGCGTGGGTG TACCAAGTTT TCTGATGAAA GCTTGTAAAG 
GGTGCTAGGT TAGAGCTGTT GGATTAGTTG GTTCGCTATT CGCTAGTAAG 
GCTTACTTGG TGAAATGGTA TCTCCACTTC GTTAATGTTC TTCAGTGGAA 
CACACGGTAG CGAGCTGTAA GAATTCTT

Gene models with high sequence identity

AT4G11820.2 [+] show detail - hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A syn...
E-value: 0; Score: 722.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	HYDROXYMETHYLGLUTARYL-COA SYNTHASE	1.6e-231
HMMPfam	Hydroxymethylglutaryl-coenzyme A synthase C-terminal	3.1e-116
HMMPfam	Hydroxymethylglutaryl-coenzyme A synthase, N-terminal	7.3e-84
superfamily	Thiolase-like	1.8e-66
superfamily	Thiolase-like	9.5e-35
PatternScan	Hydroxymethylglutaryl-coenzyme A synthase, active site	0
HMMTigr	Hydroxymethylglutaryl-CoA synthase, eukaryotic	0

See the detailed result >

AT4G11820.2

Model type: Protein coding
Short Description: hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase
Curator Summary: Encodes a protein with hydroxymethylglutaryl-CoA synthase activity which was characterized by phenotypical complementation of the S. cerevisiae mutant.
Computational Description: MVA1; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Hydroxymethylglutaryl-coenzyme A synthase C-terminal (InterPro:IPR013746), Hydroxymethylglutaryl-coenzyme A synthase, N-terminal (InterPro:IPR013528), Hydroxymethylglutaryl-CoA synthase, eukaryotic (InterPro:IPR010122), Hydroxymethylglutaryl-coenzyme A synthase, active site (InterPro:IPR000590); Has 2176 Blast hits to 2172 proteins in 850 species: Archae - 228; Bacteria - 1039; Metazoa - 300; Fungi - 184; Plants - 117; Viruses - 0; Other Eukaryotes - 308 (source: NCBI BLink).
Link: InterPro Scan - TAIR