K34230

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K34230

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K34230

Determination of introduced cDNA(s)

J033133E02 - Rice Full-length cDNAs - Original: J033133E02

full reading [+] show sequence

GAGGAGCACA TGCTGTCCCG TTGCTTAGCT CAGCTCGACA GCCAGTGAAG 
TGAGGAGACG AGAAGAGCGG TCGCCATGGG CGAGGCGGTG CTGGTGTCCA 
ATCATGGGTG CAGCGGAGGC GGAGGAAGAG TTGGAGTCGG AGTCAGGGGA 
GCGGGAGGAG GAGGACCCGG CGAGGGGAAG GCGGAGGGGC AGCAGGGGCA 
GGTGCTCGCC CTGCTACTCG CCGCGCTACG CAGGTCGGTG GTGCTCCCGT 
GCCAGATGGC CGACGCTGAC GACCCGGCAG CAGTCGCGTG GGGGATGGAG 
ATCGGCTGGC CCACCGACGT CCGGCACGTC GCTCACGTCA CCTTCGACCG 
CCTCAACGGC TTCCTCGGCC TCCCCGCCGA GTTCGAGCTC GAGATCCCGG 
GCCACGTCCC CAGCGCCAGT GCGAGCGTTT TCGGCGTGTC ACCTGAGTCG 
ATGCAGTGCT GCTTCGACGA CAACGGGAAC TCGGTGCCCA AGATTCTGTT 
ACTCATGCAG GAGAGGCTGT ACGCGCAGGA TGGCCTCAAG GCAGAAGGGA 
TCTTCCGTAT CACCCCTGAG AACAGCCAGG AGGAGAATGT CAGGGAGCAG 
CTTAACAGGG GCCTTGTGCC CGACGACATC GATGTGCATT GCTTGGCAAG 
TTTGATTAAG GCCTGGTTCA GAGAACTCCC TGAGGGTGTA CTGGATAGCC 
TCTCACCTGA GCAAGTTCTT CACTGCAACA CAGAGGAGGA ATGTGTTGAG 
CTCGTACGGC TTCTTCCTCC GACACAGGCT GCACTTCTTA ACTGGGTTGT 
AGAATTCATG GCTGATGTTG TCGAGGAAGA GGAGTCAAAC AAGATGAATG 
CCCGAAATGT CGCTATGGTC TTTGCACCCA ATATGACACA GATGTCAGAT 
CCTCTTACTG CTCTGATGCA TGCTGTTCAA GTGATGAATC TTCTCAAGAC 
ATTGATTCTC AAGACGCTTA GAGAACGTGA GCATGATGAA AGCGAATACT 
CAGCAATTTC ATCTCAGTCA TCTTCATCTG ATGAACTTGA TGAGATGCAT 
CATCATGTTG AACAAGGTGG TGACAGTGGT AGTGACACTG ACAATTTTGG 
AGATGATGGT TCTCAAAGCC AAAAAGATGT TGCCAAGGTC CTTCAACAAA 
ATGTTGTCAA TGAACAGCCG ATTGGTGCAT CCAGGAGGCA CACGTCAATT 
GATTTCCGGT TGCCTTACAT TAGCTACGGC AGCGACGATG ATGTGTCGCC 
CAATGATATT GAAGAATGTT TCTTAAGGAG GTTAGAATGG AATGCAGTGA 
GCAAAGATGC TTCTGAGATT GGCAGCATCA CTGTTCGGTC CAACCAAGAG 
GCAGGGCAAC TAAGCTTCTC CGAAGAAAAT GATGGGTATT ACAGTACAGA 
TTATCAATCT AGGAACATAC TCCTAAAAGA TTCTGTTGGT ATCCAAAGCA 
CTCTACCGAG GGAAACCGAA AGCAGGGCTG AAATTACAAA TGACGAGGTA 
CAAGACGGCG CTGAAGTGGA GGTAACTCTC GAGCAATAAT CAGACCTTCA 
AAGGATGGAG GTCTTACGTT TCGTTATCAT CGTCCATGTG TTTTAATATG 
ATCTTGTACT ATGATTCAAG CCGGTCAACA CAGGGTTGAT GAACCTTATC 
CTAGTAGTAA TATTCTTCGG ATGCTCTATA GTTCTCTGCC TTTGAGCTGT 
TTAATGTATT TGTGTGATTT CATTAACTCG GGATTTTACT

Gene models with high sequence identity

AT4G03100.1 [+] show detail - Rho GTPase activating protein with PAK-box/P21-Rho-binding domain
E-value: 2e-106; Score: 383.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	GTPASE ACTIVATING PROTEIN	2.6e-179
HMMPanther	MKIAA1688 PROTEIN	2.6e-179
ProfileScan	PAK-box/P21-Rho-binding	7.389
ProfileScan	RhoGAP	26.334
HMMSmart	PAK-box/P21-Rho-binding	2e-05
HMMSmart	RhoGAP	2e-35
superfamily	Rho GTPase activation protein	1.2e-38
Gene3D	RhoGAP	5.1e-37
HMMPfam	RhoGAP	4e-26
HMMPfam	PAK-box/P21-Rho-binding	3.4e-09

See the detailed result >

AT4G03100.1

Model type: Protein coding
Short Description: Rho GTPase activating protein with PAK-box/P21-Rho-binding domain
Computational Description: Rho GTPase activating protein with PAK-box/P21-Rho-binding domain; FUNCTIONS IN: Rac GTPase activator activity; INVOLVED IN: signal transduction; LOCATED IN: intracellular; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: PAK-box/P21-Rho-binding (InterPro:IPR000095), Rho GTPase activation protein (InterPro:IPR008936), RhoGAP (InterPro:IPR000198); BEST Arabidopsis thaliana protein match is: Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (TAIR:AT5G22400.1); Has 3907 Blast hits to 3903 proteins in 187 species: Archae - 0; Bacteria - 0; Metazoa - 2865; Fungi - 460; Plants - 187; Viruses - 0; Other Eukaryotes - 395 (source: NCBI BLink).
Link: InterPro Scan - TAIR