K34328

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K34328

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K34328

Determination of introduced cDNA(s)

  • J023002D18 - Rice Full-length cDNAs - Original: J023002D18

    full reading [+] show sequence

    Nucleotide sequence: J023002D18 - full reading 
    GAGTGGTAGT AGTAAAGCGA AAGCGAACAA AAAGGGGAAA AAAAAAAGAA 
    AAACAAGAGC GCTGTGTCGG AGACCACCGC CGGACCACCA CCGCGACCCC 
    TCGATCCCGG CGATCCCACA GCATTGGTCG GTCCCCGTCG ATCCGGCCGC 
    CGTGGGGTTT GGTCTGGTAC TCTCTGGTGG TGGTGGTGGT GGTCGCCGTC 
    GTGAACGATT CCTTTTTCTG CTTGGATTTT TTTTGTTGCT TTTGGTTGTT 
    GTGATCCCTG TGGGGCTCGG GTTCCGGCCG GTGTAGGGGA GGGGAGATGG 
    ATTTGGAGTC GGTCAACCCG GAGCTCGCCG AGATCGACGG CCAGATCGGC 
    GACATCCTCC GCGCATTGCA AAATGGGTTC CAGAAGCTGG ATAAGATCAA 
    GGATGCCAAT CGACGGAGCA GGCAACTCGA AGAGCTCACT GATAAGATGC 
    GGGATTGCAA GAGGCTTATC AAGGACTTTG AGCGAGTTGT CAAAGATATG 
    GCAGGAAGTA CCGATCCTGA GACTGCTAGG ATGCTTCATG ATAGGAAACA 
    GTCAATGATC AAAGAATTGA ACTCCTATGT TGCTTTGAAG AAACAATATG 
    CAAGTGAAAA TAAGCGAGTT GATCTTTTTG ATGGCCCAAG TGTTGAAGAT 
    GGCTTTGGTG AAGAAAATGT CCTGTTAGCA TCAAATATGA CAAACCAACA 
    GTTAATGGAT CAAGGAAACC AACTAATGGA TGAGACTGAT CAAGCTATTG 
    CAAGATCTAA ACAGACCGTC CAAGAGACCA TCAATGTAGG TACAGAAACT 
    GCAGCTGCTC TCAAATCACA GACAGAGCAA ATGAGCAGAA TTGTTAATGA 
    GCTGGATTCC ATTCATTTCT CCATTAAAAA GGCATCACAA ATGGTGAAAG 
    AAATTGGTTG CAACTGATCG CTGCATCATG GCCTTGCTTT TTCTCATTGT 
    TGCTGGAGTC ATAGCAATAA TAGTCGTTAA GATTGTAAAC CCACAGAACA 
    AGACTATCCG AGACATTCCT GGTCTCGCTC CACCAGTTAG CAGAAGGCTA 
    TTGAGTATTG TAGAAGACAT CTGAACTTCA TACATGTGAA CAAATCAACC 
    AAGAGCAGCT TGTGCTGTTT AACTCGAAGG TCGCAACTAC TACTTGAACA 
    TGATGCACAG TGTTGTAATA CTATACCCAT GGGATCCGTG TGCGAGGTAC 
    TGTAAAATTG TACGAGTATG TTATGACTCT GACAAGCAGG TTTGCTTGTA 
    AGAACTGTAT TCTGTGAACA TTCACATATG TACACGAGCA TATCAATCTT 
    TTTTAAGAGT GACAGCAGCG TATGGATCAT CCAATAATAC AGCGTTTTTT 
    GCAAATAG

    Gene models with high sequence identity

    1. AT2G35190.1 [+] show detail - novel plant snare 11
      E-value: 7e-79; Score: 291.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PTHR21230:SF2 9.10000425645573e-14
    HMMPanther PTHR21230 9.10000425645573e-14
    HMMPanther NOVEL PLANT SNARE 3.7e-88
    HMMPanther VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATE 3.7e-88
    Gene3D no description 0.00021
    HMMSmart Target SNARE coiled-coil domain 4.5e-10
    ProfileScan Target SNARE coiled-coil domain 12.829
    Coil coiled-coil 0

    See the detailed result >

    AT2G35190.1

    Model type
    Protein coding
    Short Description
    novel plant snare 11
    Curator Summary
    plant-specific SNARE located in cell plate of dividing cells. cofractionates with the cytokinesis-specific syntaxin, KNOLLE, which is required for the formation of the cell plate.
    Computational Description
    novel plant snare 11 (NPSN11); FUNCTIONS IN: protein transporter activity, SNAP receptor activity; INVOLVED IN: cytokinesis; LOCATED IN: plasma membrane, cell plate; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), Sec20 (InterPro:IPR005606); BEST Arabidopsis thaliana protein match is: novel plant snare 13 (TAIR:AT3G17440.1); Has 871 Blast hits to 814 proteins in 236 species: Archae - 12; Bacteria - 157; Metazoa - 137; Fungi - 78; Plants - 153; Viruses - 0; Other Eukaryotes - 334 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR