K34548

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K34548

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K34548

Determination of introduced cDNA(s)

  • J023085B16 - Rice Full-length cDNAs - Original: J023085B16

    full reading [+] show sequence

    Nucleotide sequence: J023085B16 - full reading 
    GCGCCTCCCC CCAAAATTTC CGACGCCAGA GCGCGAGGAG ACGCACACAG 
    AGACTTGGCA TTTGTAGAGT TTTTAGATTT ATAGATAGCA AAGATGTCGG 
    CACAGGCGGA GCTTTCCCGT GAGGAGAATG TGTACATGGC CAAGCTCGCT 
    GAGCAAGCCG AGAGGTACGA GGAGATGGTC GAATTCATGG AGAAGGTGGC 
    CAAGACGGTT GACTCTGAGG AGCTCACCGT GGAGGAGCGC AACCTCCTGT 
    CTGTTGCATA CAAGAATGTG ATTGGAGCCC GCCGTGCGTC ATGGCGCATT 
    ATCTCCTCCA TTGAGCAGAA GGAGGAAAGC CGTGGTAACG AGGACCGTGT 
    CACACTCATC AAGGACTACC GTGGCAAGAT CGAGACTGAG CTCACCAAGA 
    TTTGCGACGG CATTCTCAAG CTGCTTGAAT CCCACCTTGT CCCCTCTTCC 
    ACTGCCCCTG AGTCCAAGGT CTTCTACCTC AAAATGAAGG GTGACTACTA 
    CAGGTACCTT GCCGAATTTA AGACCGGGGC TGAGAGGAAG GATGCTGCTG 
    AGAATACCAT GGTGGCATAC AAGGCTGCTC AGGACATTGC TTTGGCTGAG 
    CTGCCTCCTA CTCATCCAAT TAGGCTTGGG CTAGCTCTTA ACTTCTCAGT 
    GTTCTACTAT GAGATCCTCA ACTCGCCTGA TCGTGCTTGC AACCTCGCAA 
    AGCAGGCTTT TGATGAGGCC ATCTCGGAGC TGGACACCCT GAGCGAGGAG 
    TCCTACAAGG ACAGCACTTT GATCATGCAA CTCCTCCGTG ATAACCTGAC 
    CCTGTGGACT TCAGACATCT CGGAGGACAC CGCGGAAGAG ATCAGGGAAG 
    CTCCGAAGCG CGACTCCAGC GAGGGGCAGT AAAGCCGGCT TTATGTGCCC 
    TAGAAGCTTG TAGCTAGTGC TTTGCTACTG TGTAATGACA CCTATGTGGC 
    TGTGATTGTT GTCGGGAAAT CTGGGGCTCC CCCGTATGTG AGGTTGCTAG 
    CGATGGTTTT GCAGTCTCGC CTTTAAGCTA CTCGTAGCAG AGCAGGTGGG 
    GGTCTGTGGA GCCAGGCCTG GTTGGGGGTG GGGGAGCCTC TTGAACTGCT 
    TGGTGGCACT TCCTGTTTTT CTGTTTGCCT TTTTATTGGT GTTTATTGTT 
    ATGGTC

    Gene models with high sequence identity

    1. AT3G02520.1 [+] show detail - general regulatory factor 7
      E-value: 4e-121; Score: 431.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPIR 14-3-3 protein 5e-179
    HMMPfam 14-3-3 protein 1.7e-115
    superfamily 14-3-3 protein 2.9e-107
    FPrintScan 14-3-3 protein 1.1e-88
    FPrintScan 14-3-3 protein 1.1e-88
    FPrintScan 14-3-3 protein 1.1e-88
    FPrintScan 14-3-3 protein 1.1e-88
    FPrintScan 14-3-3 protein 1.1e-88
    FPrintScan 14-3-3 protein 1.1e-88
    HMMSmart 14-3-3 protein 6.9e-211
    PatternScan 14-3-3 protein 0
    PatternScan 14-3-3 protein 0
    HMMPanther 14-3-3 protein 1.6e-207
    Coil coiled-coil 0
    Coil coiled-coil 0
    Gene3D 14-3-3 protein 1.9e-108

    See the detailed result >

    AT3G02520.1

    Model type
    Protein coding
    Short Description
    general regulatory factor 7
    Curator Summary
    Encodes GF14 ν, a 14-3-3 protein isoform (14-3-3ν).
    Computational Description
    general regulatory factor 7 (GRF7); FUNCTIONS IN: protein phosphorylated amino acid binding; LOCATED IN: nuclear envelope, chloroplast stroma, plasma membrane, chloroplast, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: general regulatory factor 3 (TAIR:AT5G38480.1); Has 2692 Blast hits to 2682 proteins in 382 species: Archae - 0; Bacteria - 0; Metazoa - 1258; Fungi - 312; Plants - 765; Viruses - 0; Other Eukaryotes - 357 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR