K34615

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K34615

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K34615

Determination of introduced cDNA(s)

J013153L01 - Rice Full-length cDNAs - Original: J013153L01

full reading [+] show sequence

GGCGCGCACA CGCCCCCGCC ATGGCTCTCC CCACCACCTC CCCCCTCGCC 
GCGGCCGCAG CGAGGCCCTG CGCGTTCCCG ACGCCGTGGA GATGTCGCTC 
GCCCCCTCTT CGCCGCCTCC CGCACGTCTC CTGCCAGGCG AACCGAGGGG 
GTTCTCGGGA CGGCAATTCG TTGAGCACCT CGGCGGCGGC GGCGGCGGCG 
GCGTCGCCGC CGCCGAGGTG GCGTGCCGCG GTGTCCGCGG CGCTCGCGGC 
GGCGATTGTG TCCGCGGCGC CGGCCTACGC GGATCTTAAC AAGTTCGAGG 
CGGAGCAGCG TGGGGAGTTC GGCATTGGCT CCGCTGCGCA GTTTGGGTCG 
GCCGACCTCA AGAAGGCCGT CCATGTTAAT GAGAACTTCA GGCGGGCAAA 
CTTCACTGCT GCTGATATGA GGGAGTCAAA TTTCAGTGGT TCCACATTCA 
ATGGTGCCTA TCTTGAAAAG GCTGTTGCTT ATAGAGCAAA TTTTACTGGT 
GCAGATTTGA GTGATACCTT GATGGATCGC ATGGTGCTCA ATGAAGCTAA 
CCTTACAAAT GCTGTGCTTG TACGGTCAGT CCTTACGCGT AGCGATCTTG 
GTGGAGCAAT CATTGAAGGT GCAGACTTCA GTGATGCTGT TATTGACCTG 
ACACAGAAAC AGGCTTTGTG CAAATATGCA AATGGAACAA ACCCTTTAAC 
AGGGGTCAGC ACACGGAAAA GCCTTGGATG CGGCAACAGT CGCCGAAATG 
CATATGGGAG CCCTTCCTCC CCTCTTTTGA GTGCTCCACC ACCCAAACTT 
CTGGACCGTG ATGGTTTCTG CGATGAAGCA ACTGGTATGT GTGACGCAAA 
ATAAAAGAAG AATTATCCAG CATACTGCAG AAATTGAGCA CTGAATGCTG 
TATATACATT GGAGACTGAA CAAAAGACAA AGCAGATCGG TTCAGGATTC 
AGAGAAATTG TTCTCGTTTT GCGAATGTTG TAGCATTGCA GAGAGATCAG 
GTAAACTAGG ACTGTAGACA AGTTATGTGT ACTGAACGAC TGATGCCGTA 
TATATATGTA TATCAAAGTG TTGCCGAATT C

Gene models with high sequence identity

AT1G12250.2 [+] show detail - Pentapeptide repeat-containing protein
E-value: 2e-84; Score: 309.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Pentapeptide repeat	1.7e-05
HMMPfam	Pentapeptide repeat	5.3e-08
HMMPfam	Pentapeptide repeat	1.4e-08

See the detailed result >

AT1G12250.2

Model type: Protein coding
Short Description: Pentapeptide repeat-containing protein
Computational Description: Pentapeptide repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentapeptide repeat (InterPro:IPR001646); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G44920.2); Has 7775 Blast hits to 4220 proteins in 505 species: Archae - 143; Bacteria - 5794; Metazoa - 1; Fungi - 0; Plants - 235; Viruses - 4; Other Eukaryotes - 1598 (source: NCBI BLink).
Link: InterPro Scan - TAIR