K34630

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K34630

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K34630

Determination of introduced cDNA(s)

  • J013074O20 - Rice Full-length cDNAs - Original: J013074O20

    full reading [+] show sequence

    Nucleotide sequence: J013074O20 - full reading 
    GGCTTCTGCA CACTTCTTTG CATGTGAACC CAAGCTCACG CACGCTGACA 
    GTTCATACAG CTACTGTAAA AAAAAAGTTT CCACCTGGGG CCAATACTTT 
    ATACGGACTC ACAGTAGTAC TTGTGAGTAG AACAAATGGT CTAAATTGTT 
    CATTGATTCT GTTATAGATT GCTTAAGCCA GCAGCAAGAA AGAGTACTGA 
    GGAAAATTTC TTGATTAGGA GATAGTACAA GGTTGGTGGC TATGGAGGAG 
    GAATCCCAAT CCCAATCCCA TTTCCCGCTC CGGTGGGAGA GCACCGGCGA 
    CCAATGGTGG TACGCGACGC CCATCGACTG GGCGGCGGCG AGCGGCCACT 
    ACGACGTCGT CCGGGAGCTC CTCCGCCTCG ACGCCAACCT CCTCATCAAG 
    CTCACCTCGC TCCGCCGCAT CCGCCGCCTC GAGTCCGTCT GGGACGACGA 
    CATGCGCTTC GCCGACGCCG CCAGGAACCG CGCCGCCGTC GCCCGCCGCC 
    TGCTCCACGA CTGCGAGCCC CCCAGGGGCG CCGCCGCTGG CGGCGGAAGC 
    CGGCCCAACC GGCTCATCCG CGCGGGCTAC GGCGGCTGGC TCCTCTACAC 
    GGCGGCCGCC GCCGGGGACG CGGCCTTCGT GCGGGAGCTG CTCGGGAGGC 
    AGCCGCTGCT GGTGTTCGGC GAGGGGGAGT ACGGCGTCAC CGACGTGCTC 
    TACGCCGCGG CCAGGAGCGA CAGCTCCGAG GTGTTCCGGC TGCTGCTCAG 
    CGCGGTGCTG TCCCCGCCCG AGTGCTCCGC CGGGGGAGAA GGCGACGGCG 
    GCACCGCCGC CATTGCTGGG GGTTTCATGT TCCGGTGCGA GATGATGAAC 
    CGCGCGATGC ACGCCGCGGC AAGGGGAGGC AACCTGGAGG TCCTCAGGGA 
    GCTCCTGCAG GGGTGCTCCG ACGCGTCGGC GTTCCGGGAC GCTCAGGGAT 
    CGACGATCTT GCACGCCGCG GCCGCGAGGG GGCAGCTTGA GGTTGTGAAG 
    GATCTTATTG CCTCTTTCGA TATAGTCAAC TCCACAGACG AGCAAGGGAA 
    TACGGCATTG CATCTAGCCG CCTTTCGAGG TCATTTGCCC GTGGTCAAAG 
    CCCTCATCAC TGCATCCCCA TCACTTATAT CAGCTACAAA TGAAGTTGGC 
    GACACGTTCC TTCATATGGC GCTGACTGGC TTTAGGACCC CAGGATTCCG 
    AAGGCTTGAT CGTCAGATGG AGCTTATGAA GCAATTGATT GGTGGAGTGA 
    TCATGGATTT AAGCAGCATT ATCAATATGC AAAACGACGA TGGAAGGACA 
    GTTCTTCACT TGGCTGTGAT TGGCAATCTG CACTCTAGCC TTGTTGAGCT 
    CTTGATGACT GCACCGTTGA TTGACCTTAA TGTCCGGGAC AATGATGGCA 
    TGACTCCTCT GGATTTACTT AGGAAACAGC CACCAACAGC ATCGTCTGAG 
    ATACTCATCA AGCAGCTTAT TTTGGCTGGT GGAATTGCAA ATTCAATGGA 
    CCATGAGACC AGATCAGCCA TTGCTTCTCA GCTAAAGATG CACTGTATCG 
    TAGGCAGCCC GGGAACATCC TTCAAGATCC CAGATGCCGA GATCTTCCTC 
    CATGCAGGTA TCGATGCGTC AGACATCAGC GAAAGAACGA ACTCATTCTC 
    TAGCGTTGGA CAGAGTGAGC CAGAATTTCC GGAATCCAGT CGTAAGAAGC 
    TGAACTCTAT GCAAAATGCA GCGAAACATC TCAAGATCCT ACTCAGATGG 
    CCCCTCCGCA AGGAGAAGAA ATCATCATCC GGTGCCCGAA TCGCCTTCAG 
    GCTCGGGCTC CTGGTCGTCG TCGTCCTTGG TCGACAGGAT TGAAGCCGTC 
    CATCTGGACA AGAATGGCCA AGCATCTCCT GATACCAGTG TGGTGACCAG 
    GCGTACACCC AAGAAGCACG GGTCTTTGAA CAGCAGGCTC ATGAACCAAT 
    ACTTCTGCAT CGGAGCGCAG GGGATAGCTG TCGAGGACTC AACCACGGGG 
    CAGCGATCAA GTCGGATGTT CAGAAGTTCA CTTCTGTCAG CTGCCTGAAT 
    TCGTAATTTA GACATGGTTT GCTTTCCTTG ACTTCACTGC TTACAAGTTA 
    CAGCTGATCT GTTAGTATGT GCGAGTGCAT GTGAGAAGAC TGTCATATGT 
    TGTGTTTGTA TTACTGATGC AAAATGGTGA GATCTACTAA TGTAATGTAG 
    TGCTGTTGGT AGTGTGTAAT GATTTTGTTG GGAGAGTGAG TACAATGGAA 
    GGCATGGTTT TCAAGTTCTA TGGTTTTTAT ATCTTACAAT ATCATATGAG 
    GTTAGTGAGT ATAATTTGTA GCAGAGTAAA TTACATTGGT GGTACACGAA 
    CTTGTTAAGT GGGTGCAATT TAGTATATAA ATTTGTAAAA TGCTCATTTT 
    GGC

    Gene models with high sequence identity

    1. AT3G01750.1 [+] show detail - Ankyrin repeat family protein
      E-value: 1e-124; Score: 444.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Ankyrin repeat 0.036
    HMMSmart Ankyrin repeat 2600
    HMMSmart Ankyrin repeat 560
    HMMSmart Ankyrin repeat 16
    HMMSmart Ankyrin repeat 0.071
    HMMSmart Ankyrin repeat 0.0016
    HMMSmart Ankyrin repeat 2400
    HMMSmart Ankyrin repeat 1
    HMMSmart Ankyrin repeat 3100
    HMMPanther ANK REPEAT-CONTAINING 3.4e-40
    HMMPanther ANKYRIN REPEAT-CONTAINING 3.4e-40
    HMMPfam Ankyrin repeat 2e-07
    ProfileScan Ankyrin repeat 10.82
    ProfileScan Ankyrin repeat 10.205
    ProfileScan Ankyrin repeat-containing domain 33.182
    Gene3D Ankyrin repeat-containing domain 2.2e-34
    superfamily Ankyrin repeat-containing domain 1.5e-44

    See the detailed result >

    AT3G01750.1

    Model type
    Protein coding
    Short Description
    Ankyrin repeat family protein
    Computational Description
    Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT3G04140.1); Has 30372 Blast hits to 15038 proteins in 745 species: Archae - 53; Bacteria - 2422; Metazoa - 15116; Fungi - 2165; Plants - 2906; Viruses - 97; Other Eukaryotes - 7613 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR