K34742

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K34742

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K34742

Determination of introduced cDNA(s)

  • J023102D17 - Rice Full-length cDNAs - Original: J023102D17

    full reading [+] show sequence

    Nucleotide sequence: J023102D17 - full reading 
    GAAGGATCTC AATCACAGAG AAGGCACATC ATCAAACAAA TCAGGAAAGG 
    AAGGAAGAAA GGAGAGGAAA GGAGGGAGTG AAGAACAAAT CTTGATTCGT 
    CCTCACTGCG CACTGCCCCC CCGTCCGTGT GGTTCCAGCT GATCACCAGC 
    AGCGGCCGGC GTCTTCTCGT CTCGATCCCT CCTGCCTCTT TGGCCGCGGC 
    TCGATTTGGG CGGTCAAGAT GAACAGGATG ATGTTCATGG CGTGCTGCTA 
    CAACGATCCG GACATGCTCA TCGATCCGGA CACGGTCTAC CCCATCCGCC 
    CCGAGTGCCG CGAAGACGCC GCCAAGACGC GATTCAAGCC CAGGCCTGGC 
    CTCACTCTAA GTCCAAGGAG ATGGAAGCTG CTTCACAATG AAGAAGGTGT 
    CCTAGACATA GCTGGAATGA TCAAAAGAGT GCAGCGTGGG GGTACCCACC 
    CAAATATCAA AGGAGAAGTT TGGGAGTTTT TGCTGGGTTG TTATGACCCT 
    AAAAGCAATA CTGAACAAAA GAGCCAATTA AGACAACAGC GAAGGTTAGA 
    ATATGAGAAA CTGAAAACAA AGTGCCGAGA AATGGACACG GCAGTCGGTA 
    GCGGAAGGGT AATTACTATG CCTGTCATAA CAGAAGATGG CCAGCCTATA 
    CAGGATCCTA ACTCAGTTGA TGCAGAACAA CAAGCTAGTG ACACACCCCT 
    ACCAAAGGAA GTAATTCAAT GGAAGCTAAC TCTGCACCAG ATTGGTCTTG 
    ATGTTAATCG TACAGATCGT CAACTAGTCT ATTATGAGAG CCAAGAGAAC 
    TTGGCCAGGT TGTGGGACAT TCTTGCAGTT TATTCATGGG TTGACAAGGA 
    CATCGGTTAT TGTCAAGGAA TGAGTGATCT TTGCTCACCA ATGTCGATCC 
    TCTTGGAACA CGAAGCGGAT GCGTTTTGGT GCTTTGAGCG ACTTATGCGC 
    AGGGTGCGAG GAAATTTCGT GAGTAGTTCA ACCTCCATTG GAGTTCGATC 
    TCAACTGACC ATATTGTCAT CCGTAATGAA AGCCGTTGAT CCGAAGCTAC 
    ATGAGCATTT AGAAAATCTT GATGGAGGGG AATACTTATT TGCCTTCCGT 
    ATGCTGATGG TTCTTTTCCG AAGGGAGTTC TCTTTTGTAG ACACAATGTA 
    CCTTTGGGAG CTCATGTGGT CTATGGAGTA CAATCCAGGT CTCTTTTCTA 
    TGTTGGAGAG TGATAACAGT ACATCTCAAG CAAACACAAA AGATGAAAAT 
    GCCTTAAAGC AGTGTGGAAA ATTCGAACAG AAAAACTTAC AGGCGGCTAA 
    AAAGGAAGAG CAGATACCTC TATCTGTGTT CATTGTGGCT AGTGTCATAG 
    AGGCTAGAAA CAAGCAGATA CTGACTGATG CAAAAGGTCT AGACGATGTC 
    GTGAAGATAT TAAACGATAT CACTGGAAGT CTGGATGCAA AGAAGGCATG 
    CAGAGGGGCA CTGAAGATTC ATGAGAGATA CCTAACCACA GTAAAAGCAT 
    GATAGTAGCA TTTACAGATC CTTATTAATA CATCTTAAGT GACGATATTC 
    GATTGGGCTT TTTGTGAACT GGAGAAGCAG CTACATCGCA ATTTTTCCCC 
    ATTTTTGATA CGTGTGTGTA TTATACAATT CTTTGATTTT CTTTGTAATA 
    CTACAAAAGA AAGGAACGCC AATCCTGTAA AGGTACATCA CGAAATGTTT 
    GGTATCGGTG GAATTATGCT GCAATAACAT CGTCATGATT CTTCTTT

    Gene models with high sequence identity

    1. AT4G27100.2 [+] show detail - Ypt/Rab-GAP domain of gyp1p superfamily protein
      E-value: 1e-143; Score: 507.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily RabGAP/TBC 1.7e-42
    superfamily RabGAP/TBC 1.1e-30
    HMMPanther GTPASE ACTIVATING PROTEIN-RELATED 2.3e-127
    HMMPanther TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING P 2.3e-127
    HMMPfam RabGAP/TBC 3.7e-36
    HMMSmart RabGAP/TBC 6.4e-35
    ProfileScan RabGAP/TBC 35.6

    See the detailed result >

    AT4G27100.2

    Model type
    Protein coding
    Short Description
    Ypt/Rab-GAP domain of gyp1p superfamily protein
    Computational Description
    Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT5G54780.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR