K34809

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K34809

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K34809

Determination of introduced cDNA(s)

J013122N19 - Rice Full-length cDNAs - Original: J013122N19

full reading [+] show sequence

GAGTAGTCGA AGAATCCCAA ACCCTCTCCT CCTTCCATGG CGATTTGACC 
CCCAAACCCT AGCAATGCCC TAGACTAGGA CTAGTAGGTA GCGGAAGGAA 
GCTGGAATCG GAAGGAAGGA AGGAAGGTGG GAGGGATGGG TTCGAAATCG 
AACACGGAGA GGGCGAGGAA GGCGCTGGAG GCCATGAAGC AGCTGGGTTT 
CTCCAAGAAG GAGGCCACCC CTGTCCTCAA GAACCTCCTC AGGCTCTTCG 
GCAACAACTG GGAGCCCATC GAGGACGAGT GCTACCGCGC CCTCGCCGAC 
GCCATCCTCG ACCGCCACCA GGAGACCGCA GCTGACCGCG GCTGCAGCGC 
GACAAGGCCA ACGCCGGACG ATGATCATCA CCCCCTTACC CTCTGTGGTG 
CTTCGCGCGA CGTGGATACT GAGACCGACG AACCTCGCAC CAAGAAGCCT 
AGGGCCACCA ACTCAGATCC TCAATCGCCT CCATCCCTTA CGGACGACCA 
AGATGTTCCT GCAGCTATCT CACCCCCATC CCATGGTGCT TCTCCTCAAT 
TCCGTCCACA GACCAGGGCC TCTGCACGAC TGCGCCAAGC TTCTCCTTCT 
TCTGTTACAG CAGCACACAA GAGGCCAAGA CAGATGATGG ATGAAGATTT 
CCAAGACTCT GCATTCCTCA GGGAACCCAA GCCTGAGCCC GATATCGATA 
TGGACGCCAT ACAAGGCACT GCTGCTACAT CAGACTGCCC AAATGCCCAC 
CTTGGCCTCA TTGACTATCC GCTCAATGCC AGCTCCTCAA GGGTTGCACT 
TCCTCTGGCA TTGCTTCCAC CTGATCAAAA TGTTCCACAG ATTTCAGGTC 
CTAAAAAAAG GGCAATTCAA CCTTGTAGCA AGGTGAACAC GGGGGAAGGA 
TCTTCAGTCA TTGATGTAGC ATCATCCACT ATGGGTGAGG TCAAAATGTC 
ACTGAAATGC AGTGTTGACC CAAAGTTCCG CATGCCTTCC TTAGAAGCAG 
TTTTCAAGAT GGTGGAGGAT AAATATCTTC ACTCATACAA GATTCTGCCT 
CCTGAGTTTT CCATTGGTAG CCTCATGAAT GAGATATGCC AATGTGTTGT 
ACAACTGGGT AGTGATCATA TTGCAGAACA TAATACAGAA TCAGATGTTG 
CTGGCAATGG GAGATGCTCA CAAAATGAGC CAATGACAGG TAGCATTCCA 
TTTGTGAAGC CAATAGCATG CGAGGATGGT GGAAATAGGA AATGTAAATC 
TGCAGGAGAA TCATTTATTG TGGAAGACTC AGAAAATTCA AGTGTTGCTA 
AACAGCAGAC TCATTTGGCA CTTGCCAACT TGAAGCCTAT CCATGATGTA 
ACTGATATAT CCAAGGGAGA AGAGAGAGTG AGGATATCGG TGGCCAATGA 
ATTTGCAAGT GAGAAATGTC CTCCTTCCTT TTATTATATA CGAGGAAACC 
TTGTTTTCC

Gene models with high sequence identity

AT5G43990.5 [+] show detail - SET-domain containing protein lysine methyltransferase family protein
E-value: 1e-27; Score: 121.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	WIYLD domain	7.5e-18
HMMPanther	SET DOMAIN PROTEIN	1.5e-09
HMMPanther	SET DOMAIN PROTEINS	1.5e-09

See the detailed result >

AT5G43990.5

Model type: Protein coding
Short Description: SET-domain containing protein lysine methyltransferase family protein
Curator Summary: Encodes SUVR2, one of the four closely related Arabidopsis SUVR proteins that belong to the SU(VAR)3-9 subgroup of SET-domain proteins. Proteins containing the evolutionarily conserved SET domain are involved in regulation of eukaryotic gene expression and chromatin structure through their histone lysine methyltransferase (HMTase) activity. SUVR1, SUVR2 and SUVR4 proteins contain a novel domain at their N-terminus, and a SUVR specific region preceding the SET domain. Localized to the nucleolus, maybe involved in regulation of rRNA expression.
Computational Description: SUVR2; FUNCTIONS IN: zinc ion binding, histone-lysine N-methyltransferase activity; INVOLVED IN: chromatin modification; LOCATED IN: nucleolus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), WIYLD domain (InterPro:IPR018848), Pre-SET zinc-binding sub-group (InterPro:IPR003606), Pre-SET domain (InterPro:IPR007728); BEST Arabidopsis thaliana protein match is: homolog of SU(var)3-9 1 (TAIR:AT1G04050.1).
Link: InterPro Scan - TAIR