K34819

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K34819

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K34819

Determination of introduced cDNA(s)

  • J023028A06 - Rice Full-length cDNAs - Original: J023028A06

    full reading [+] show sequence

    Nucleotide sequence: J023028A06 - full reading 
    GTGAGCGAGG GAGAAAGAGA GAGGCGTTGG TCGGTGGCCG CCCGTCGCTT 
    CTCCTCTTCC GACGCCGGCG CGGCCGAGAG AAATGGCGGT GGCTGCGAGG 
    GCTCCGCTCG GGGTGGTGGC GGTGGTGGCC GTGCTCGTCG TCGGCATCTT 
    CATGCCCGCC GCGGCGCAGG CCCCGGCGCC CGCGCCCGTC AGCGACGGCA 
    CATCGATCGA CCTGGGGATC GCATACATCC TGATGCTGGT GGCTCTTGTG 
    CTCACCTACC TAATCCATCC ACTGGATGCT TCTTCTCCCT ACAAGCTTTT 
    CTAATCCCTT GTTCTTCCTT CATCTGGCTT GGTTAGGGTA AATTCTACTT 
    ATTATTTAGC CATGGCGACG ATTGTTAACA TTTTAGGTGA GATGTTAGGA 
    GGTTTGGAGT GATTTGTCTG TCCATGATGG GGGTGGTATC AATCAGATCG 
    TTGTTTGGTG GTGCGATTGG CTGTATTGGA TTCCATGATT TGGTGCCAAG 
    TTGTGCGTGC TGGATTCGTT C

    Gene models with high sequence identity

    1. AT2G46330.1 [+] show detail - arabinogalactan protein 16
      E-value: 4e-11; Score: 64.30

     

    InterPro Scan Digest

    See the detailed result >

    AT2G46330.1

    Model type
    Protein coding
    Short Description
    arabinogalactan protein 16
    Curator Summary
    Encodes arabinogalactan protein (AGP16).
    Computational Description
    arabinogalactan protein 16 (AGP16); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1070 (InterPro:IPR009424); BEST Arabidopsis thaliana protein match is: arabinogalactan protein 20 (TAIR:AT3G61640.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR