K34908

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K34908

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K34908

Determination of introduced cDNA(s)

  • J013111L13 - Rice Full-length cDNAs - Original: J013111L13

    full reading [+] show sequence

    Nucleotide sequence: J013111L13 - full reading 
    GGCATCCGCA CCCGGATCTG CCACCGCCGC GGCTTCCCTC CCCCCCTCCT 
    CCCGATCCAC CCCTCCCGCC GCCGCCACCG CCACCGCCGC CGCCGCCGGC 
    CGGCGAGAGA GACAGGATGT ACGGGTGGGA GATGCTCTCG TTCAACATCC 
    ACGACGGCTT CCTGGAGGCC ATCGTGCGGG GGAACCGGTC GGGCCTCCTC 
    ACCGCCGCCG ACTACAACAA CCTCTGCCAG TGCGAGAACC TCGACGACGT 
    CAAGATGCAC CTCACCGCCA CCGAGTACGG CCCCTACCTC CAGAACGAAC 
    CTTCACCCCT GCACACAACT ACAATTGTGG AGAAGTGCAC TCTTAAACTG 
    GTTGATGAGT ACAAACACAT GATGTGCCAG GCGACTGAAC CACTATCCAC 
    ATTCTTACAG TATATAACGT ATGGCCACAT GATCGACAAT GTTGTACTTA 
    TTGTTACCGG AACATTGCAT GAGAGAGATG TTAATGAACT ATTGGAGAAA 
    TGCCATCCAT TGGGAATGTT TGACAGCATT GCATCTCTTG CAGTTGCTCA 
    AAATATGCGC GAGCTTTACA GATTGGTTTT GGTTGACACA CCGTTAGCCC 
    CATACTTCTC AGAATGCATT ACATCTGAGG ATTTGGATGA CATGAATATC 
    GAGATTATGA GGAACACTCT TTACAAAGCA TACCTTGAGG ACTTTTACAA 
    ATTCTGTGAA AAACTTGGTG GTGCAACTGC TGAGATTATG TGCGATCTTC 
    TGTCATTTGA AGCAGACAGA AGAGCTGTGA ACATTACAAT AAACAGTATT 
    GGTACAGAGT TGACTAGAGA TGACCGTCGG AAGCTGTACT CCAACTTTGG 
    TTTATTGTAT CCATATGGTC ATGAAGAACT GGCTGTTTGT GAAGATGTTG 
    ATCAGGTCCG TGGTGTAATG GAGAAGTACC CTCCATACCA GGCTATTTTT 
    GCCAAAATTT CGTATGGGGA AAGCCAAATG TTGGATAAGG CCTTCTATGA 
    GGAGGAAGTG CGGAGGCTGT GCTTGTCATT TGAACAGCAG TTCCACTATG 
    CTGTTTTCTT TGCTTACATA AGGCTACGGG AGCAGGAGAT TAGGAACTTG 
    ATGTGGATAT CAGAGTGTGT TGCGCAGAAT CAGAAGAACA GGGTCCACGA 
    CAGCGTTGTG TTCATCTTTT GACCTGCTCC TGCCACTCCA CGGATGGTTG 
    TACAAAATGC CAGGTTTGAT GATGGCACAA TCGGCTGCGA TAATTATAAG 
    CACATGACTT ATTATGCCCC ATTCATTTCT CTTTCTGCTC TGCTCGAAAG 
    CAAGACCATG AGTGAATGTA CTATTGTTTT ACTTTTTGTA GTAAAATAAA 
    GGCTTGATTA TCTTGTGGTA AATTGAATAA ATCCTGTCTA TTTTGGGAGG 
    CTGTAACTAT CAATATCTAG TGAACATGGA ACAGTTTGTT GGCTTATTGC 
    CAACATCCAA ATTGCGCCCA ACTCTGTTTT GGTGCATCAG GTTCTGTTCT 
    AATTTTCTAC TTATGTAACC TGACGGAGTA TAAAGAGAGA ATGTTTCTCT 
    TTTTTG

    Gene models with high sequence identity

    1. AT3G28715.1 [+] show detail - ATPase, V0/A0 complex, subunit C/D
      E-value: 0; Score: 667.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam ATPase, V0/A0 complex, subunit C/D 6.3e-94
    HMMPanther VACUOLAR ATP SYNTHASE SUBUNIT AC39 1.6e-205
    HMMPIR ATPase, V0 complex, subunit D 8.9e-243
    superfamily ATPase, V0/A0 complex, subunit C/D 2.2e-95

    See the detailed result >

    AT3G28715.1

    Model type
    Protein coding
    Short Description
    ATPase, V0/A0 complex, subunit C/D
    Computational Description
    ATPase, V0/A0 complex, subunit C/D; FUNCTIONS IN: hydrogen ion transmembrane transporter activity, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: proton transport, ATP synthesis coupled proton transport; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: ATPase, V0/A0 complex, subunit C/D (InterPro:IPR002843), ATPase, V0 complex, subunit D (InterPro:IPR016727); BEST Arabidopsis thaliana protein match is: ATPase, V0/A0 complex, subunit C/D (TAIR:AT3G28710.1); Has 636 Blast hits to 635 proteins in 308 species: Archae - 22; Bacteria - 2; Metazoa - 293; Fungi - 152; Plants - 74; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR