K34909

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K34909

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K34909

Determination of introduced cDNA(s)

J023011H22 - Rice Full-length cDNAs - Original: J023011H22

full reading [+] show sequence

GAACGGTAAA CAAGCACACA TCCACACACA AGCACACATC CACACAACGG 
CAATTAATCA TTGCAGAGAG CTAGCAGCTA GGTTAGTTAG GTGAGCAGTG 
GCTGCAAGGG GCAAGCCATG GCATCTGTGG AGACGTGGGT AGGGTTCGGG 
TCGGCCCTGG CCGGCGTCGG CTTGCTTTGG TCGAGGATGC CGGAGCACGT 
CCATGACGAG GCTAGGTACA TCATCAGTAG CCTGGTCCCC ATGGCGATAT 
CCTACTTCAA CCCCTACGAG CAGATCACCG TGTCCGAGTA CGGCGAGGAG 
CGGTTCCGAC GCAACAAGAT GTTTGACGCC GTCTCCACCT ACCTGAGCCG 
CGTGTGCGCC GGTGGCGCCT GCAAGCTCAA GGCCGAGCTC TGCAACAACG 
GCAGGGACGA CCCAATTGTC ACTCTGGACG AGAATCAGGA GGTCGTCGAC 
AGCTTCGACG GCGCACGCAT GTGGTGGAGG CTGTGCCCCA AGGCCTCCAA 
GAACAAGGGG GCCATCACCG TCACCTACTA CCCCGGGGAA GCGGACAAGC 
CGCGCTGCTT CAAGCTAGTG TTTCACAAAC GCCACCGCCA GCTCGTGCTC 
AACTCCTACC TACCAAGCGT CGTCCGGCGT TGGCGCGAGC TAACCGCGAT 
GAACCGGCAG AGACGGCTGT TCACCAACCA TGCCAATGAG GCGAAGAAGA 
GCGTGTGGAC CAGTGTCCCT TACAACCCCC CTGCAACGTT CGACATGCTC 
GCCATGGACC ACGCCAAGAA GGTTGAGATC GTGGACGATC TCACAACGTT 
CCAGAAGGGG AAGGAGTACC ACTCAAAGGT TGGCAAGGCG TGGAAGCGGG 
CTACCTTCTG CATGGGCCAC CGGGCACGGG CAAGTCCACC ATGATTGGGG 
CCATGGCCAA CTTCCTCGAC TACGACGTCT ACGACCTCGA CCTAACTTCC 
GTCAAGAACA ACAGCGAGCT GCGGAAGCTA TTCCTTGATA CGACGGACAA 
GTCCATCATC GTTATAGAGG ACATTGACGC GATCGAGGTC GAACTCACTA 
CCAAGCGCAA GGGCAAGAAG GCAGCCAACG GCGACGAAAT CCACGACAAG 
CGTATGCTGA TAGAGTTTTC CGACAAGAAC GATGAAAAAA GCAAAGTGAC 
TCTGTCGGGC CTGCTCAGCT TCGTCGACGG GCTGTGGTCG GCGTGCGGCA 
GTGAGCGGAT CTTCATGTTC ACGACGAACC ACATTGACCG GCTTGACCCA 
GCACTAATCC GGCCAGGGAG GATGGACAAG CACATCGAAA TGTCTTACTG 
CCGCTTCGAG GCCTTCAAGG TACTCGCCAA GAGCTACTTG GACATCACCG 
AGCACTCACT ATTCGCTGAA ATCGAGCGGC TGCTCGACGA CACTGACACA 
ACTCCGGCAG ACGTCGCCAA TAACCTCATG CTGAGGAGCA AGAGGAACGG 
TGAAATCAGT CGACTGCTCG ACGAGATCGA TGGGGCACCG CGGGCAGATG 
TGGCCAAATG GTGCAAGAGG AAGAGAGACA CGGACGAGTG CCTGGCAGGT 
TTCGTAGAAA TACTAAAGAA ATCCAAGATG GAATCTGCAA CAACTCCAAT 
GGATTCAATG GAAGAAGCCA AAGAGGAACG ACCTAACGCA AAAGAAAGCT 
ACAAAATGGG GCGGACATAT GATGAGAACT ATAGGTTGGG AAATGCCAGC 
TAGACTCCTT GTTTTGTGTT TGCTATTTTA CCAGACTTGC GTGTTTACTA 
GTCACTTAAG GTTTCAAAGC CATACATAAA ATGGAATAAT ATAAAATTAG 
TGGTGTAACA CTACTTATTT TCTCGATCT

Gene models with high sequence identity

AT3G28510.1 [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
E-value: 6e-101; Score: 142.00

InterPro Scan Digest

Program	Description	E-value
HMMSmart	ATPase, AAA+ type, core	2.8e-07
HMMPanther	AAA-TYPE ATPASE-RELATED	3.6e-116
HMMPanther	BCS1 AAA-TYPE ATPASE	3.6e-116
HMMPanther	AAA-TYPE ATPASE-RELATED	3.3e-57
HMMPanther	BCS1 AAA-TYPE ATPASE	3.3e-57
HMMPfam	ATPase, AAA-type, core	1.3e-17
superfamily	P-loop containing nucleoside triphosphate hyd	6.9e-36
Gene3D	no description	2.6e-25

See the detailed result >

AT3G28510.1

Model type: Protein coding
Short Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, 4 leaf senescence stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G28540.1); Has 37676 Blast hits to 28869 proteins in 2974 species: Archae - 1302; Bacteria - 8814; Metazoa - 8958; Fungi - 4310; Plants - 3042; Viruses - 177; Other Eukaryotes - 11073 (source: NCBI BLink).
Link: InterPro Scan - TAIR