K35051

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35051

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35051

Determination of introduced cDNA(s)

  • J023100P07 - Rice Full-length cDNAs - Original: J023100P07

    full reading [+] show sequence

    Nucleotide sequence: J023100P07 - full reading 
    GTTTCTTGAG CTAGCACAGC ATTAATTAAA CCACCAACCC AAATATTGTT 
    CGATCGATCT GCATCTGCTA GCTGCTGCTG CTGCTGCTTT TTCTTCTTCT 
    TCTACTGGAT CGAGAGAGAG AGAGAGAGAA AGAAAGAAAG AAGATTATAT 
    ATATTAACAA TGGCCATCGG AGCGTTCGTC GAAGGAGGCG GCAGTGGGTA 
    CAGCGGGCGC GTGACTCCGT TCGTGGTGCT GTCGTGCATC GTCGCCGGCA 
    GCGGTGGCAT CCTCTTCGGC TACGACCTCG GCATCTCAGG TGGGGTAACG 
    TCGATGGAGC CGTTCCTGAA GAAGTTCTTC CCGGACGTGT ACCATCAGAT 
    GAAGGGGGAC AAGAAGAAGG TGAGCAACTA CTGCCGCTTT GACAGCGAGC 
    TCCTCACCGT CTTCACCTCC TCCCTCTACA TCGCCGGCCT CGTCGCCACT 
    CTCGTCGCCT CCTCCGTCAC CAGGCGCTTC GGCCGCCGTG CCTCCATACT 
    CATCGGCGGC TCCGTCTTCG TCGCCGGCTC CGTCTTCGGC GGCGCCGCTG 
    TCAACATCTA CATGCTCATC CTCAACAGGG TCCTGCTCGG CATTGGACTC 
    GGCTTCACCA ACCAGTCGAT CCCGCTGTAT CTGTCGGAGA TGGCGCCTCC 
    GCAGCACCGT GGCGCCATCA ACAACGGGTT CGAGCTGTGC ATCAGCATCG 
    GCATCCTCAT CGCTAACCTC ATCAACTACG GCGTGGACAA GATCGAGGGC 
    GGGTGGGGGT GGAGGATCTC CCTGTCCATG GCCGCCGTCC CCGCGGCGTT 
    CCTCACCGTG GGCGCGCTGT TCCTGCCGGA GACGCCCAGC TTCGTGATCC 
    AGCGCAGCGG CGACGTGGAC TCGGCTCGGG CGTTGCTGCA GCGGCTGCGC 
    GGCACGGCGG CGGTGCACAA GGAGCTGGAG GACCTGGTGA TGGCGAGCGA 
    GGTGTCCAAG ACGATCAGGC ACCCGCTGCG GAACATGCTC CGGCGTCGGT 
    ACAGGCCGCA GCTGGTGATC GCGGTGCTGG TGCCCCTGTT CAACCAGGTG 
    ACCGGGATCA ACGTGATAAA CTTCTACGCG CCGGTGATGT TCCGGACGAT 
    CGGGCTGCGG GAGAGCGCGT CGCTGATGTC GGCGGTGGTG ACGCGGGTGT 
    GCGCGACGGC GGCGAACGTG GTGGCGATGG CGGTGGTGGA CAGGCTGGGG 
    AGGAGGAGGC TGCTGCTGGT GGGAGGGGTG CAGATGCTGG TGTCGCAGGT 
    GATGGTGGGG GCGATCCTGG CGGGCAAGTT CAGGGAGCAC GGGAGGAGAT 
    GGAGAAGGAG TACGCGTACC TGGTGCTGAG CGTCATGTGC GTCTTCGTCG 
    CGGGCTTCGC CTGGTCGTGG GGGCCCCTCA CCTACCTGGT CCCCGCCGAG 
    ATCTGCCCTC TGGAGGTGCG GTCGGCGGGG CAGAGCATCG TCATCGCCGT 
    CATCTTCCTC CTCACCTTCC TCATCGGCCA GACCTTCCTC GCCATGCTCT 
    GCCACCTCAA GTTCGCCACC TTCTTCCTCT TCGCCGCCTG CCTCTGCGTC 
    ATGACGCTCT TCGTCTTCTT CTTCCTCCCT GAGACCAAGC AGCTGCCCAT 
    GGAGCAGATG GATCAGCTCT GGAGGACGCA TTGGTTCTGG AAGAGGATCG 
    TCGGCGACTC CCCCCAACAA CAAGTAGTCG AGCTACACCA CCACCACCAA 
    AGATCATCAT CAGAATAAAC AAACTAAATC ACTAAACACG CCTTCCACCT 
    AAGTATATAC GCATCATACC CTATATAATA TAATATGCAT GTATTAATTA 
    ACTGATGATC GACTGTATGC ATAATGCATG TACACTACTA CTACATATAT 
    ACAACAGCAA CAGTCAGCCA GCCGCCCACA ATAAGATCAG CCCAGCTCAA 
    TTGCACCTTA ATTAGTTAAT TAAGAGGCTG ATCACAAAAT AATTACTCCA 
    TATGTGCAAC CATTTGTGGC CTCACGCCTT GTTAACTCTC TGTAACAGTA 
    TTACTATGCA TATATATAAT TTGCATAATG GAAGATGTTT CCTCT

    Gene models with high sequence identity

    1. AT1G11260.1 [+] show detail - sugar transporter 1
      E-value: 8e-101; Score: 365.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Sugar transporter, conserved site 0
    PatternScan Sugar transporter, conserved site 0
    FPrintScan Sugar/inositol transporter 9.3e-12
    FPrintScan Sugar/inositol transporter 9.3e-12
    FPrintScan Sugar/inositol transporter 9.3e-12
    FPrintScan Sugar/inositol transporter 6.4e-07
    FPrintScan Sugar/inositol transporter 6.4e-07
    Coil coiled-coil 0
    HMMPanther MONOSACCHARIDE TRANSPORTER, PLANT 4.4e-199
    HMMPanther SUGAR TRANSPORTER 4.4e-199
    HMMPanther HEXOSE CARRIER PROTEIN 1.7e-21
    HMMPanther SUGAR TRANSPORTER 1.7e-21
    HMMPfam General substrate transporter 2.4e-82
    HMMPfam General substrate transporter 2.1e-26
    superfamily Major facilitator superfamily, general substrate transporter 1e-42
    superfamily Major facilitator superfamily, general substrate transporter 1.6e-12
    ProfileScan MFS 35.155
    ProfileScan MFS 9.697

    See the detailed result >

    AT1G11260.1

    Model type
    Protein coding
    Short Description
    sugar transporter 1
    Curator Summary
    Encodes a H+/hexose cotransporter.
    Computational Description
    sugar transporter 1 (STP1); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: nucleus, plasma membrane, vacuole, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sugar transporter protein 12 (TAIR:AT4G21480.1); Has 29569 Blast hits to 28978 proteins in 2050 species: Archae - 503; Bacteria - 13950; Metazoa - 4366; Fungi - 6940; Plants - 2466; Viruses - 2; Other Eukaryotes - 1342 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR