K35228

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35228

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35228

Determination of introduced cDNA(s)

  • J013122K17 - Rice Full-length cDNAs - Original: J013122K17

    full reading [+] show sequence

    Nucleotide sequence: J013122K17 - full reading 
    GACTCTTCCG CCCCCAAATC CTCCTGCTCA CCTCACCTTA TCCTCAGCTC 
    TCAGCACCTC TTCCTCCCTC CCCCAAGCTT CCCTCTAATG GCGTCCGCCA 
    ACGCCATCTC CACCGCCTCC CTCCTCCGCT CTTTCTCCTC CCAGGGGAGG 
    GTGAGGAGGG CCAAGAATGG GCGGGCGCAG CGGCTAGTGG TGCGGGCGGA 
    CGCCAAGGAC ATCGCCTTCG ACCAGAAATC CCGGGCGGCG CTCCAGGCCG 
    GCGTCGAGAA GCTCGCCAAC GCCGTTGGCG TCACCCTCGG CCCACGAGGG 
    AGAAACGTAG TGCTTGATGA GTACGGCAGT CCCAAAGTGG TAAATGATGG 
    AGTCACCATT GCCCGGGCTA TTGAGCTATA TGATCCGATG GAAAATGCTG 
    GTGCAGCATT GATCCGTGAG GTTGCTAGCA AGACCAATGA TTCTGCTGGT 
    GATGGGACTA CAACCGCCTC TGTCCTTGCT CGTGAAATCA TCAAGCTGGG 
    CCTTTTGAGT GTAACTTCTG GTGCAAACCC TGTATCACTT AAGAAAGGAA 
    TAGACAAAAC AGTGCATGGT CTTATTGAAG AGCTGGAGAA GAAGGCTAGA 
    CCAGTCAAGG GCAGTGGTGA TATCAAAGCT GTTGCCTCTA TCTCTGCTGG 
    CAACGATGAA CTTATTGGAT CTATGATTGC TGATGCTATT GACAAAGTGG 
    GTCCTGATGG TGTCCTTTCA ATTGAGTCTT CATCATCTTT CGAGACTACT 
    GTTGATGTTG AAGAAGGAAT GGAGATTGAC CGTGGATACA TTTCCCCTCA 
    ATTTGTGACA AACCTCGAGA AATCGATCGT AGAGTTTGAG AATGCTAAGG 
    TTCTTATTAC TGATCAGAAG ATCACCAGCA TAAAGGAGAT TCTTCCAATC 
    TTGGAGAAGA CAACACAGTT GAGAGCTCCA CTGTTTATTA TTGCTGAGGA 
    CATTACTGGC GAAGCTTTGG CAACCCTTGT TGTTAATAAG CTCCGAGGAA 
    TTCTCAATGT TGCAGCAATC AAAGCCCCAA GTTTTGGTGA GCGACGCAAG 
    GCTGTCCTTC AGGATATTGC CATTGTGACA GGCGCTGAAT TTCTAGCAAA 
    AGACCTGGGT TTGCTGGTTG AGAATGCAAC TGAAGAGCAA CTTGGGACAG 
    CGAGAAAAGT CACAATACAT CAGGCTACAA CAACCCTCAT AGCGGATGCA 
    GCTAGCAAAG ATGAGATTCA GGCAAGGGTT GCACAGCTAA AGAAGGAACT 
    CTCCGAAACT GATTCGATAT ATGATACAGA GAAATTGGCT GAGAGGATTG 
    CAAAGCTTTC TGGTGGTGTG GCTGTCATCA AGGTTGGGGC TGCAACTGAG 
    ACTGAGCTTG AGGACCGCCA ACTACGTATC GAGGATGCGA AGAATGCAAC 
    TTTCGCAGCT ATTGAGGAGG GCATTGTTCC TGGAGGTGGT ACAGCGTATG 
    TGCATCTTTC AACTACCGTC CCTGCGATCA AAGAAACAAT CGAAGACCAT 
    GATGAGCGCC TTGGTGCAGA CATTATTCAA AAGGCGTTGG TAGCTCCCGC 
    TTCACTGATT GCCCACAATG CTGGAGTGGA AGGGGAAGTG GTAGTTGAGA 
    AGATCAAGGA CGGCGAGTGG GAAGTCGGGT ACAATGCGAT GAACGACAAG 
    TATGAGAACT TGATTGAGGC GGGTGTTATT GACCCAGCTA AGGTGACGAG 
    ATGCGCGCTC CAGAATGCCG CCTCGGTGGC TGGAATGGTC CTTACCACAC 
    AGGCCATTGT TGTCGAGAAG CCGAAGCCCA AGGCTCCTGT TGCTGAGCCG 
    GCAGAGGGAA CCCTTACCGT CTAAACAGTG GTGAATTTCT TCAGGGTGGC 
    TTTGTTTAGA TGGTTCATAC CAACTGAAAT GGTAGAATTT TTGTCTGGGA 
    GTTTTTGGTT CAGATCAACC GAAAGGTCTA GTGTAGGATT GGTTTCCATT 
    TTTGAGATTG AAGGTGCAAC CTGCCTGATC TGAACTCATA TGTCCATCAA 
    AGAAATAATT TGCATCATTA TCGTCATCTT CGGTTTAAAC TTTATAAAGT 
    AAATCATATG GTGTTTCTCC

    Gene models with high sequence identity

    1. AT2G28000.1 [+] show detail - chaperonin-60alpha
      E-value: 0; Score: 848.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Chaperonin Cpn60 1.7e-297
    Coil coiled-coil 0
    superfamily Chaperonin Cpn60/TCP-1 1.7e-67
    superfamily GroEL apical domain-like 1.5e-54
    superfamily GroEL-intermediate domain like 1.2e-12
    superfamily GroEL-intermediate domain like 8.4e-07
    PatternScan Chaperonin Cpn60, conserved site 0
    HMMPfam Chaperonin Cpn60/TCP-1 1.4e-117
    HAMAP Chaperonin Cpn60 35.98
    HMMPanther RUBISCO SUBUNIT BINDING-PROTEIN ALPHA SUBUNIT 0
    HMMPanther Chaperonin Cpn60/TCP-1 0
    FPrintScan Chaperonin Cpn60 2e-56
    FPrintScan Chaperonin Cpn60 2e-56
    FPrintScan Chaperonin Cpn60 2e-56
    FPrintScan Chaperonin Cpn60 2e-56
    FPrintScan Chaperonin Cpn60 2e-56
    Gene3D no description 2.7e-73
    Gene3D no description 2e-30

    See the detailed result >

    AT2G28000.1

    Model type
    Protein coding
    Short Description
    chaperonin-60alpha
    Curator Summary
    Encodes chaperonin-60 alpha, a molecular chaperone involved in Rubisco folding. Mutants display aberrant chloroplast and embryo development.
    Computational Description
    chaperonin-60alpha (CPN60A); FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, chloroplast organization, embryo development; LOCATED IN: in 8 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperonin Cpn60, conserved site (InterPro:IPR018370), Chaperonin Cpn60 (InterPro:IPR001844); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT5G18820.1); Has 33896 Blast hits to 33887 proteins in 8716 species: Archae - 792; Bacteria - 21835; Metazoa - 1656; Fungi - 1573; Plants - 797; Viruses - 2; Other Eukaryotes - 7241 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR