K35343

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35343

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35343

Determination of introduced cDNA(s)

  • J013072J11 - Rice Full-length cDNAs - Original: J013072J11

    full reading [+] show sequence

    Nucleotide sequence: J013072J11 - full reading 
    GAATTTTTAA CTCGTCTTCG AATCTATACT TTCAGCATTG TGCTCAATAC 
    TTTGTTTGGA TTAAGTGTGA AGTACTGGAT GGCTGTTACC ACGAGATTCC 
    TTCTTGGTGC TCTGAATGGA TTGCTTGCAC CAATAAAGGC TTACTCTATC 
    GAAGTTTGCC GAGCTGAACA TCAAGCTCTG GGCCTATCAA TTGTGAGCAC 
    AGCATGGGGA ATAGGTCTTG TAGTTGGTCC AGCAATTGGA GGCTACCTCG 
    CGCAGCCTGT CAAACAATAT CCTCATCTTT TTCATGAAAA GTCAATATTT 
    GGGAGATTTC CATACCTTCT ACCCTGTCTT TGTATATCAC TTTTTGCTCT 
    CTTGGTCCTC ATAAGCTGTA TATGGCTACC GGAGACCCTA CATAAGCATA 
    AAGGCCTTGA AACAGGAGTG GAGGCAGCTG AAGCTTCTAC TACTCAAGGA 
    AGTGCAGAAT CACATAAGAA AAGTTTATTC AGAAATTGGC CATTGATGTC 
    ATCTATCATC ACATATTGTG TCTTCTCCCT TCACGACACC GCATATAGCG 
    AGATATTTTC TCTGTGGACT GTAAGTGATA GAAAATATGG TGGACTCAGC 
    TTTTCATCTA AAGATGTTGG GCAAGTTCTT GCAGTGGCAG GTGCCAGCCT 
    TCTTGTATAT CAACTTTTTA TCTACCGTTG GGTTGATAAA ATTCTTGGAC 
    CTATCAACTC AACCCGCATT GCGTCGGTAC TATCTATACC GATTATTGCT 
    GCTTATCCCT TTATGACGCA CTTATCAGGA ATAAGACTTG GTGTGGCCCT 
    CTATAGTGCA GCAATGATCA AAAGTGTTCT TGCTATAACT ATAATTACGG 
    GCACTTCTCT TCTACAAAAC AAAGCAGTGC CACAAGGGCA ACGGGGTGCT 
    GCAAACGGAA TAGCTACAAC GGCCATGTCC TTGTTCAAGG CTGTTGCACC 
    AGCTGGCGCA GGTGTTCTAT TCTCTTGGGC ACAAAAGCGA CAGCATGCAG 
    CATTTTTTCC AGGTGATCAG ATGGTGTTTC TTTTACTGAA CCTGACTGAA 
    GTCATTGGAC TCATGTTGAC CTTCAAACCT TTCTTGGCGG TTCCTCAACA 
    ATACAAATAG AACATTCAGA TACTGTCAGC TGGTGTGGCA AACACCATAG 
    AGAGATAGTT GTAGCTAGTA CTATGTTTTA GTATTAAAAC ATGGTTTAGA 
    TATGGTTGTA GCAGAGTGTT AGAAACATGC ACCATTCCAG GTGCAGAGCC 
    TCTGTTAGGT TGTTCTTCTT TTTGTTCTGC TTTGGGTCTG TGAGATAAAT 
    AATCTTGCAA AAGCTATGAC ATTTTTTATT GCAGCTTTGG AGT

    Gene models with high sequence identity

    1. AT5G13750.2 [+] show detail - zinc induced facilitator-like 1
      E-value: 8e-118; Score: 421.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Major facilitator superfamily MFS-1 3e-21
    superfamily Major facilitator superfamily, general substrate transporter 7e-25
    HMMPanther MAJOR FACILITATOR SUPERFAMILY ANTIPORTER 8.6e-113
    HMMPanther MAJOR FACILITATOR SUPERFAMILY MEMBER 8.6e-113
    ProfileScan MFS 8.655

    See the detailed result >

    AT5G13750.2

    Model type
    Protein coding
    Short Description
    zinc induced facilitator-like 1
    Computational Description
    zinc induced facilitator-like 1 (ZIFL1); FUNCTIONS IN: tetracycline:hydrogen antiporter activity; INVOLVED IN: response to karrikin; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846), Tetracycline resistance protein, TetA (InterPro:IPR001958), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: zinc induced facilitator 1 (TAIR:AT5G13740.1); Has 14029 Blast hits to 13852 proteins in 2396 species: Archae - 230; Bacteria - 10365; Metazoa - 433; Fungi - 1573; Plants - 330; Viruses - 0; Other Eukaryotes - 1098 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR