K35406

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35406

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35406

Determination of introduced cDNA(s)

  • J023099B20 - Rice Full-length cDNAs - Original: J023099B20

    full reading [+] show sequence

    Nucleotide sequence: J023099B20 - full reading 
    GATTTCGGTG CTTAACCAAA CTCACCATAA TATCAGTTCA TCCACAACAA 
    TGTCGGCCTA CTGCGGCAAG TACAAAGATG AGCTCATAAA GAATGCTGCC 
    TACATTGGCA CCCCGGGCAA GGGTATCCTC GCTGCGGACG AGTCCACTGG 
    CACCATCGGC AAGCGCTTCG CCAGCATCAA TGTTGAGAAC GTCGAGGATA 
    ACCGCCGTGC CTTCCGCGAG CTCCTCTTCT GCACCCCTGG CGCCCTCCAG 
    TACATCAGCG GCGTGATCCT CTTCGACGAG ACCCTCTACC AGAAGACCAA 
    GGATGGCAAG CCCTTCGTCG ATGTCCTCAA GGAGGCCGGT GCCCTCCCCG 
    GCATCAAGGT GGACAAGGGC ACCATCGAGG TCGCCGGCAC CGACAAGGAG 
    ACCACCACCC AGGGCCACGA TGACCTCGGC AAGCAATGCG CCAAGTACTA 
    CGAGGCCGGT GCCCGCTTCG CCAAGTGGCG TGCCGTCCTC AAGATCGGAC 
    CCAACCAGCC CTCCCAGCTT GCCATTGATC TGAACGCCCA GGGCCTTGCT 
    TGCTACGCCA TCATCTGCCA GGAGAACGGG CTGGTGCCGA TCGTCGAGCC 
    GGAGATCCTC GTCGATGGCC CTCACGACAT CGATCGATGC GCGTACGTCT 
    CCGAGGTGGT CCTCGCCGCG TGCTACAAGG CGCTGAACGA GCACCATGTC 
    CTCCTCGAGG GCACCCTCCT GAAGCCCAAC ATGGTCACCC CGGGTTCCGA 
    CGCCAAGAAG GTGGCGCCGG AGGTCATCGC GGAGTACACC GTCCGCACCC 
    TCCAGAGGAC CGTCCCTCCT GCTGTGCCGG CCATCGTCTT CCTCTCCGGT 
    GGACAGAGCG AGGAGGAGGC GACGCTGAAC CTGAACGCCA TGAACAAGCT 
    CAGCGCCAAG AAGCCGTGGT CGCTGTCCTT CTCCTTTGGC CGTGCCCTGC 
    AGCAGAGCAC GCTCAAGGCC TGGGCTGGCA AGACGGAGAA CGTAGAGAAG 
    GCCAGGGCGG CCTTCCTCGT CAGGTGCAAG GCCAACTCCG AGGCTACCCT 
    GGGTACTTAC AAGGGTGATG CTGTCCTCGG CGAGGGCGCT GCTGAAAGCC 
    TGCACGTCAA GGACTACAAG TACTGATCTG CATCAGGCGC TGGCCTGCTA 
    TGGCTTGGCT ACCTGATCGA TTTCCCATTC TGGGGCCGTT ACATAATGCG 
    GTTTTGATAT CTAGAGGCTC TAACAGGATT CACAATTTCG GATCGGAATT 
    TCAGAATTTT TCCCTTTCCG ATAGATCGAA CCCTGGAGCA CAATATATCT 
    GTGGTTATCT AAAAGCCTTG TCTTAATAAT CCAGAACCTT TTTTTTTCTT 
    GTAAAATATT TGCTGATGAA CATCAGCTGG CCCGGAGTTT TTATTTTTAT 
    CAATCACTTT GTAACTGTCT GATTTGCCCG GTGCTGTGTG ATTTTGTTGA 
    ATGAAATTAA CTTCACTTCT TTGAGTTT

    Gene models with high sequence identity

    1. AT2G36460.1 [+] show detail - Aldolase superfamily protein
      E-value: 2e-167; Score: 585.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Fructose-bisphosphate aldolase, class-I 2.3e-269
    superfamily Aldolase 6.9e-159
    HMMPfam Fructose-bisphosphate aldolase, class-I 4e-168
    Gene3D Aldolase-type TIM barrel 1.8e-145
    PatternScan Fructose-bisphosphate aldolase, class-I 0

    See the detailed result >

    AT2G36460.1

    Model type
    Protein coding
    Short Description
    Aldolase superfamily protein
    Computational Description
    Aldolase superfamily protein; FUNCTIONS IN: copper ion binding; INVOLVED IN: response to cadmium ion, response to salt stress, pentose-phosphate shunt; LOCATED IN: mitochondrion, plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Fructose-bisphosphate aldolase, class-I (InterPro:IPR000741); BEST Arabidopsis thaliana protein match is: Aldolase superfamily protein (TAIR:AT3G52930.1); Has 5036 Blast hits to 5030 proteins in 977 species: Archae - 0; Bacteria - 714; Metazoa - 1434; Fungi - 8; Plants - 477; Viruses - 0; Other Eukaryotes - 2403 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR