K35412

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35412

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35412

Determination of introduced cDNA(s)

  • J023012B21 - Rice Full-length cDNAs - Original: J023012B21

    full reading [+] show sequence

    Nucleotide sequence: J023012B21 - full reading
    GACTTCTCCT CAGCTCGCTT TCCCCTTCAC CACTGCAACT TGCTCATCAC 
    CCACACACCA AGCAAGCACT CACTCTCTCT TGCTAGCTCT CTCCACCACA
    AGAAGAAACT AGCTAGCCAA GAAACGGAGG ATCGATCGAG GTTCAGGATA
    GAGATTATTA CATCGTCGTG GTCGTCGATC ATGGGGGATC ATCAGATGAT
    GCACGCAGCT CCGGCGGCGA TGTACAACGG CGGCGGTGGT ACGACGAGCT
    CTCATGGCGT GTGGTGGAGC AACGCGGTGG GGGTACCGGC GGCGGCGACG
    TGCTCGACGA CGACGGAGCT CGCCGGGTAC ACCGCCTGGT CGTCGGCTCT
    GGCCGCTGGA TACGATGGCA TGGTAGCTGA CAACGGCGGC AAGCAGGCGA
    AGAGCACCAC CACGGCGTCG TCGGAGTCGC CCGGCAACAA CAGCTCGGTG
    ACCTTCCAAG AGCCGGCGAG CATCCCCGAC CCGGCCGCCG TCGCCGCCGT
    GCCGCAGCCG GGGCTCGCCG GCTTCACCGA CTGGACCCAG CCTTTCATGA
    ACAACGGTGC TGGTCTGCAT GAGTTTCTGC AAGATGGCCA CCATGACATG
    AGCGCGTCGA GCTTGATGAA TCACTCATCA AATAACCTAG CACTGCAGCA
    AGCAGGTCAC CACCACGAGC TGCTGTCCAG CTTCGGCTCA GACCTGCTCT
    TGTCGCCGAC GTCGCCGTAC GGCGGATTCC AGTCCTCGCT GCTGAGGAGC
    CTCATGGAGC CGACGGCGAA GCAGCAGCAG CAGCAGCCGG CTTTGGCTGG
    ACTCCAGCAG TATCATCAGT ACCAGCAGCA GATGGGACAC GCACCAGCAG
    CTGCTGCCAA GTTCGCGCAG GCAGTTGGGG CCAGGGATTC ACTCCAGTTC
    ACCAACGACG CGCCGTTCTG GAACCCTTCT GCCGGATTCG GCATGCCGGC
    GGCTGTGGCG GTGGCGGCGG CGGCGGCGCA AGATCAAGCT AGCGTTCGCT
    CTGCCAAACG CTCGTCGCCG GCGCCGCCGC GTGCGGCAGC AACCCTTGCA
    TTAAAGACTG CTATGGAAGG AGTAGGGGAC TCTAGCTCAG TGATCACCAA
    GAAGGAGACA GCGTTCAAGA AACCGAGACT CGAGACACCG TCGCCATTGC
    CGACCTTCAA GGTTAGGAAG GAGAAGCTAG GGGACAGGAT CACAGCGCTC
    CAACAACTAG TCTCTCCTTT TGGAAAGACG GATACCGCAT CGGTGCTCCA
    TGAGACCATC GAGTACATCA AGTTCCTGCA CGACCAAGTT GGTGCTCTTA
    GTGCTCCATA CTTGAAGAAC GGTGCCCATC AAGTGCCCCA CTTGAAGAAC
    TCAAGTCCTG ACAAGTCCGA GCACGGCGAG ATATCACTGA AGGGCCGGGG
    GCTTTGTCTG GTGCCGATAT CGAGCACGTT CGCCGTTGCC AGCGAGGTGC
    CCGTCGAGCT GTGGACTCCA TTTGGTGCCA ACTTTATTAG GTAGAAGAAC
    AAGTCCTGGA ACTGAAGAAC ACTGATCAGA AGCGTCAAAT TAACGATCGA
    GTAGCTAGCT GCTAATATAG TCGCCTAGCT AGCACAAATC GAGATCTGAT
    GTTTCTTGAT TGTATCTACG TACTAGTTGT ATGATGATAA TTTCGTAACC
    CTAGTAGTAC TGATGCTGTG GCTGTAATCA GCAAAGCACT GAGCTAGTTA
    GCTAGATGAA CCTTTGGAAT GAGTGCTTGA AGACTTGGAT TCATTCTTCA
    GGTTCATCAC AGAATAAGGA ATCGGCTAGT TGAGAGGGGA CAGAATTATG
    TACTGATCAT CATCAGGTTC TTATGATTGG TTGCTAGGTT GCATCGTATC
    AATGAGTAGT TGCGGAAGAA TTTGTTATAG AATTGATGGT TCGATTCAAT
    GGTGGATCAA TTAAGTAATG TAGCAGGTTT CTCTCTGTTG ATTGTACC

    Gene models with high sequence identity

    1. AT1G61660.3 [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
      E-value: 8e-40; Score: 162.00

     

    InterPro Scan Digest

    See the detailed result >

    AT1G61660.3

    Model type
    Protein coding
    Short Description
    basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    Computational Description
    basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT3G20640.1).
    Link
    InterPro Scan - TAIR