K35515

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35515

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35515

Determination of introduced cDNA(s)

  • J023007H17 - Rice Full-length cDNAs - Original: J023007H17

    full reading [+] show sequence

    Nucleotide sequence: J023007H17 - full reading 
    GGCCTCCTCC TCCCCTCCCC TCCACTCCGC GAGCCGCCAC CTCCTCCGCC 
    GCCGACGACG ACGACGACGC CGCATCCCCA ACCCTAGCCG CCGCTCGGCG 
    GTGCTGCGAC GTAGGAGCGG GTCTCCTCTC TGCATGGTCC GTTAGGGCTA 
    CCGAGCCGAT CGACCGGCGG GCCTAAAACC CTAGCCGAGA GAGGCTGCGG 
    GTTGGGTGGG GGTGGGGGCG TGCTCGACTC TCCGGCGGCG CCATGAAGCT 
    GACGGTGAAG ACCCTCAAGG GCACCCAGTT CGAGATCCGG GTGCAGCCCA 
    ACGACACCAT TATGGCTGTC AAGAAGATCA TTGAAGAGAT ACAAGGAAAG 
    GATAGCTACC CATGGGGCCA ACAGTTGCTG ATTCACAATG GCAAGGTTTT 
    GAAAGATGAA AGTACATTGG AAGAGAACAA AGTCAGTGAA GTTGGGTTTT 
    TAGTTGTCAT GCTTAGTAAG AGTAAAGCTT CTGGTTCCAG TGGAGCTTTA 
    AGTTCACTGA CTTCAAGCAC CCCTTTGACC AGGCAAGAAA CTCCTGCGGA 
    TGCTTCACGA GCAGCTCCTC AACCCCTAGT TGCACCTACA AGAACACCCC 
    AGCCCGAAAG GCCACCTGCG GTAGCCCCTT CAAACGCATA TGGTCAAGCA 
    GCATCAAATC TATTGTCGGG AAGCAATCTT GACACTACGA TTAACCAGCT 
    GATGGAAATG GGTGGTGGCA GTTGGGACAG AGATAAAGTC CAAAGAGCTC 
    TACGTGCAGC TTATAACAAC CCAGAGCGTG CTGTTGAATA TCTATATTCT 
    GGCATTCCAA TTACAGCGGA GGTTGCTGTT CCAGCAGGTG GTCAAGGGGC 
    AAACACAACC GAGCCATCTT CTACTAGGGA AGCCAGTCTG TCTGGAATTC 
    CAAACGCATC CCCGTTAAAT CTTTTCCCAC AGGGCGATGC AAATGATGGA 
    GGTGGTGCTG GTGGTGGAAC ACTTGAGTTC CTTAGACATA ACCAACAGTT 
    TCAGGCGCTT CGGGAAATGG TTCATACTAA CCCACAAATA TTGCAGCCTA 
    TGCTCCAGGA ACTGAGCAAG AAGAATCCTC AACTTCTGAG GTTGATTCAG 
    GAGAACCATG ATGAGTTCCT TCAGTTAATA AATGAGCCCT TTGATGGTGC 
    TGATGGGGAC TTCTTAGACC AACCTGACCA GGATGAGATG CCCCATTCTA 
    TCAATGTCAC ACCTGAAGAG CAAGAGGCGA TTGGACGGCT TGAAGGCATG 
    GGATTTGACA GAGCACGTGT CATCGAAGCA TTCTTCGCCT GTGACAGGAA 
    CGAGCAACTC GCAGCAAATT ACCTTCTTGA ACATGCTGCT GATGAAGATT 
    AGATGGAATT ATTTAAACCC GCTTATTCTG TACACCTGCC CTGCAATTTA 
    TCAGACTTTT GAAGTTTGCG GGTGCTTTGG ATCCAAATTG AACAAGCTGA 
    GATGGAGCTA ACACCGCGTT GCATCGATTT ATCTCTTGTA CAATACTTGC 
    TTTATTTAAT TGCTGGCTTA GCATTCAAAT ACATGGCTTA ACATTTATTC 
    GAGCTGTCTG AGGGACGGAT CCTTTTGTCC ATCCGTTTTT AGCCAGAAAT 
    TTCAATGGAT GTGAATTGTG TTGACCACAT TTTCTGTCCT GTTTGTGTTA 
    TTCAATTCGT GATTTCTAGA GCAGT

    Gene models with high sequence identity

    1. AT1G79650.2 [+] show detail - Rad23 UV excision repair protein family
      E-value: 4e-117; Score: 419.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily XPC-binding domain 3.9e-22
    superfamily Ubiquitin-like 1.3e-20
    superfamily UBA-like 1.4e-12
    superfamily UBA-like 2.1e-10
    HMMSmart Ubiquitin 2e-18
    HMMSmart Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote 6.3e-07
    HMMSmart Heat shock chaperonin-binding 0.00046
    HMMSmart Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote 4.8e-09
    HMMPanther UV EXCISION REPAIR PROTEIN RAD23 1.3e-137
    HMMTigr UV excision repair protein Rad23 9.9e-153
    FPrintScan UV excision repair protein Rad23, C-terminal 2.3e-30
    FPrintScan UV excision repair protein Rad23, C-terminal 2.3e-30
    FPrintScan UV excision repair protein Rad23, C-terminal 2.3e-30
    FPrintScan UV excision repair protein Rad23, C-terminal 2.3e-30
    ProfileScan Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote 13.053
    ProfileScan Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote 14.764
    ProfileScan Ubiquitin supergroup 18.301
    Gene3D no description 1.6e-21
    Gene3D no description 7.2e-15
    Gene3D XPC-binding domain 8.2e-22
    Gene3D no description 3.2e-16
    HMMPfam Ubiquitin-associated/translation elongation factor EF1B, N-terminal 1.8e-13
    HMMPfam Ubiquitin-associated/translation elongation factor EF1B, N-terminal 5.5e-08
    HMMPfam XPC-binding domain 1.6e-22
    HMMPfam Ubiquitin 4.4e-13

    See the detailed result >

    AT1G79650.2

    Model type
    Protein coding
    Short Description
    Rad23 UV excision repair protein family
    Curator Summary
    Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome.
    Computational Description
    RAD23; FUNCTIONS IN: damaged DNA binding, ubiquitin binding, proteasome binding; INVOLVED IN: proteasomal ubiquitin-dependent protein catabolic process, base-excision repair, nucleotide-excision repair; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), UV excision repair protein Rad23 (InterPro:IPR004806), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquitin (InterPro:IPR000626), XPC-binding domain (InterPro:IPR015360), Ubiquitin supergroup (InterPro:IPR019955), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: Rad23 UV excision repair protein family (TAIR:AT1G16190.1); Has 8953 Blast hits to 4550 proteins in 626 species: Archae - 0; Bacteria - 45; Metazoa - 4005; Fungi - 1183; Plants - 2293; Viruses - 114; Other Eukaryotes - 1313 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR