K35549

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35549

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35549

Determination of introduced cDNA(s)

J013151J01 - Rice Full-length cDNAs - Original: J013151J01

full reading [+] show sequence

GATGGACCAG CGCGGCGGCG CCGGCGGCGC CGCCGAGACC CACCGCGTGC 
AGCTGCCGGA CACGGCCACG CTCTCCGACG TCAAGGCCTT CCTCGCCACC 
AAGCTGTCCG CGGCGCAGCC CGTGCCCGCC GAGTCGGTGC GCCTCACCCT 
CAACCGCTCC GAGGAGCTCC TCACCCCCGA CCCCTCCGCT ACCCTCCCGG 
CCCTCGGGCT CGCGTCCGGT GATCTCCTCT ACTTCACGCT CTCCCCCCTC 
CCGTCGCCCT CGCCTCCGCC GCAGCCGCAG CCACAGGCCC AACCCCTGCC 
CCGTAACCCT AACCCTGATG TCCCCTCGAT CGCGGGAGCT GCTGACCCGA 
CCAAATCTCC TGTGGAGTCT GGTAGCTCCT CGTCGATGCC GCAAGCTTTG 
TGCACGAATC CTGGCTTACC TGTCGCATCC GATCCGCATC ATCCTCCACC 
GGATGTGGTG ATGGCGGAGG CCTTCGCCGT GATCAAGAGC AAGTCGAGTC 
TCGTCGTCGG GGATACGAAG AGAGAGATGG AGAATGTCGG TGGTGCGGAT 
GGAACCGTCA TCTGTCGCCT TGTCGTGGCG CTGCATGCGG CCTTGCTCGA 
TGCCGGCTTC CTCTATGCAA ACCCGGTGGG GTCTTGCCTT CAGCTGCCAC 
AGAATTGGGC GTCAGGTTCT TTTGTCCCCG TATCGATGAA GTACACCCTG 
CCAGAGCTTG TAGAAGCGTT ACCTGTGGTT GAGGAGGGGA TGGTGGCAGT 
GCTGAACTAC TCCTTGATGG GGAATTTTAT GATGGTGTAT GGGCATGTGC 
CTGGGGCAAC ATCGGGGGTG CGAAGGTTGT GCTTGGAGCT GCCGGAGCTT 
GCGCCTTTGT TGTACTTGGA TAGTGATGAG GTGAGCACAG CAGAGGAGAG 
GGAAATTCAT GAGCTGTGGA GGGTCCTGAA GGATGAGATG TGCTTGCCTC 
TGATGATATC GTTGTGTCAA CTGAACAATT TGAGCTTGCC ACCGTGCTTG 
ATGGCGCTGC CAGGTGATGT CAAGGCAAAG GTCCTGGAGT TTGTTCCTGG 
GGTGGATCTT GCAAGGGTTC AATGCACGTG CAAGGAATTG AGGGATCTTG 
CTGCAGATGA TAATCTTTGG AAGAAGAAGT GTGAGATGGA GTTCAATACT 
CAAGGTGAGA GTTCTCAGGT GGGCAGGAAC TGGAAGGAAA GGTTTGGAGC 
AGCCTGGAAG GTTTCTAACA ATAAGGGCCA GAAGAGGCCC AGTCCTTTTT 
TTAACTATGG CTGGGGTAAT CCTTATAGTC CACATGGCTT TCCGGTGATT 
GGTGGGGATT CAGACATGCT CCCGTTTATC GGGCATCCCA ATCTCCTTGG 
GCGCAGCTTT GGAAATCAGC GCAGGAACAT CTCACCCAGC TGCAGTTTTG 
GTGGACACCA TCGCAACTTT CTTGGTTAAG TCATTTCGTG GGTTTTGCTA 
GTATGTTAAG AATATTTCAT CTGAAAAGCT ACATATAACA TATTGTACAT 
ATTTTATAGT TGGCACTTTA TGCATGTTCA GTTGTTAACT GTATTACTGT 
ACTCGTAATC TTTTCTTTCT TTGTTGATAT ATCCTATATT TTCTTGT

Gene models with high sequence identity

AT1G23780.1 [+] show detail - F-box family protein
E-value: 2e-34; Score: 144.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	PTHR22844	1.79999951654676e-05
ProfileScan	F-box domain, cyclin-like	0
HMMPanther	PTHR22844:SF11	1.79999951654676e-05
HMMPfam	F-box domain, cyclin-like	0.0023
superfamily	F-box domain, Skp2-like	4.60000044330908e-12
HMMSmart	F-box domain, cyclin-like	8.39999858592306e-06

See the detailed result >

AT1G23780.1

Model type: Protein coding
Short Description: F-box family protein
Computational Description: F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G23770.1); Has 310 Blast hits to 310 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 148; Fungi - 0; Plants - 156; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link: InterPro Scan - TAIR