K35621

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35621

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35621

Determination of introduced cDNA(s)

  • J033108L18 - Rice Full-length cDNAs - Original: J033108L18

    full reading [+] show sequence

    Nucleotide sequence: J033108L18 - full reading
    GATTTGACGG AGGAGCGGAA GTGAACAACC GCGCCACGCC ATGGGGCGAA 
    GCGAGTCGGC GTCCGCAGGA TTTCCCTCTC CGCCCGTGCC CTAAACCGCT
    CGCCGCCGGC GACGTTGCGC CCCCGACCGC GAGTGGGCCG GCGGCGATGT
    CCGGCCCCGT CGTTCCCCTC GCCTGGACGG CTCAAGGGCC CTGCGAGCCC
    TCCCCTGGCT CTGGCCCGCT CCCCGTTTCC GCCGCCGCTA GCGATCCGCC
    GGCGCCCTCC TCGTCGGTGC CCGCCGGCGG TCGTGAGCCC TCCGCTAGCG
    GGCTGCCCCC CGCGGTGACT CCTCAGCTTG GGGATCATGA TCAAGGTGGT
    TTACCTAACT GTGTGCCAAA AGTGGGGATG ACCTTTAATT CAGAGAACGA
    AGCTTATGAT TTCTACAACT CCTATGCTAG AAATGTTGGG TTTAGTATCC
    GGAAGAACCA CGCAAATACT AGGGCGGATG GGAGTCTTTG CTCCAAATAT
    TTCCTGTGCA GCAATGAAGG GCAGCCGGTG GCAAGCACTA CCCAGCCGGG
    GTGGAAGAAA CGTTCTTCAA CAAGATCTGA TTGCAAGGCT CGTCTTCAGT
    TCTATATTTC CCGAGAAGGT ATCTGGACAG TGCAGAAGGT TGAGCTCGAT
    CATAAGCACT ATCTCGTAAG TCCTGATAAG TCACACATGT TAAGGTCCCA
    GCGCCGTTTG ACACCGTCAT ATCAACAGAT AGTGAATGAA ATGCGGCAAG
    AAGGTATTAC AGCAGCTGAT ATGCAAAGAG TATTTCGGCA ATGGTCCAGG
    GGAGCTGAAA ATGTGCATCT TCTGAAGAAA GATACTCAGA GAAAGTACCT
    CCAACCAAGT TATGCACAGA AATTGCTTGA GTATTTGAAG AACAAACAAA
    CAGAAAATCC TTCATTTTTT TATGCAGTTC AGCTGAATGA TGATGGTCGA
    ATAGCAAACT TCTTCTGGAC AGATTGTCAA GCTATTGTGG ATTATGCTTG
    TTTTGGTGAT GTCGTGTCTT TTGATACAAC ATTTGAAACA AACAAGTTTG
    AAATGCCGTT TGCTCCATTT GTGGGGACTA ACCATCACAA ACAACCCATT
    TTGTTTGGAG CTTCGCTGAT ATATGATGAA TCTTCAGAGT CTTTCAATTG
    GCTGTTTCAA ACCTTCCTTA CGGCAATGTC TGGGAAGCAA CCGGCAACAA
    TTTTCACAGA TCCCTCTGCT GAAATAATAA AGTCTGTTAG GTTAGTGTTT
    CCAAACTCAA GTCACCGCCT GTGTTTGCGG CATATCTGTC ATAATGCTGT
    TAAGCATTTG AATCACGTAA TTTGCAACCA TCCAGAATTT CTATCTGATT
    TTAAGAGACG TATCTATGAA GAAAGGTCTG TAACGTTCTT TGACTTGAAG
    TGGAAGGAAT TGGTTAACGC ATATAATCTA GACGGCAATG ATTGGATGAA
    TAATTTATAT GCAATGCGTG AAAAGTGGGC TGCTGTGTAT TCCCGTGACT
    CATTTTACGC TGACATGATG ACAATCCAAA ATGCTGAAGG CACAAGTGAT
    GCATTGAAGA ATTTTCGGAG GAAACTCTGC CTTCCAGAAT TCTTAGAGGA
    GTATGAGAAG TGCATAACTA GTTTCCGCCA AAATGAACTA GAAGCAGATT
    ATAATTCCCG TCAAACCAGT CCGGTTCCCT ATGTTCCTGA TTTGCCTATG
    TTGAAGACGG CTGCTGAGTC CTATACAAGG AATTTGTATT CGCATTTTGA
    AGAAGAATTC AAAAAATTGT TCACTCTGTC TTGTTCGTTG CTATCACAAG
    ACAGAACAAT CAGTACTTAC AAATTGACAC CTTTAAATTC TGAAGAAGAA
    GCATATGTTG TTTTTAATTC TGAGGATACA ACAGTATCAT GTTCTTGCAG
    GATGTATGAG TGCACAGGTA TGCTATGCAA GCACGCGCTG CGAGTCCTTA
    ACTACAGCAA TATTTTTACA TTCCCCTCAC ACTATGTTTA CAAAAGGTGG
    ACAAAATATG CAAAAGCCGG ACTATTTGGC TGCAGAAACA ATTCCCAAAG
    CGGCAATGGA AGTTCGATGT TAAGATGTGC GCGTATATCT CAAAAGATGC
    ACTCAGTTGC TCTAAGATAT TCGATGTCAG AAAAGGCGCT TCAGTTTTTG
    GAAAGTGGGG TAGATAAGTT GACATGTGAA GTAGAAAATT TACTTAGTCA
    CATAAACTTA AATGGAAATG GAAATGATAC CGGTCAATCT TCTGGTTTTT
    GCAATGGTGC AATGGCAGAA AGTTTAGGCC ATTCAGAATC AATGTACAGC
    GAAGGGGCCT AACCGCCTAA CCTGCAAAAA TACTAGAAAA AAGTGTTCTC
    AAGGAGGAAA ATGGAAATGC ACTGCTAGAA GGAGAGGCAC CTACAATCAA
    CTGTTATTTT CTGTTTATGT TAAATTCAAA TCTCAGTTCT TAACTGTGTG
    AGGCACTACT CCAAAAAGGA AAAAAAATTC AAAG

    Gene models with high sequence identity

    1. AT4G38180.1 [+] show detail - FAR1-related sequence 5
      E-value: 9e-107; Score: 385.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Zinc finger, SWIM-type 10.348
    HMMPfam MULE transposase, conserved domain 2.3e-20
    HMMPfam Transcription factor, FAR1-related 2.3e-18
    HMMPfam Zinc finger, SWIM-type 3.3e-05
    HMMSmart Zinc finger, PMZ-type 3.2e-05

    See the detailed result >

    AT4G38180.1

    Model type
    Protein coding
    Short Description
    FAR1-related sequence 5
    Computational Description
    FAR1-related sequence 5 (FRS5); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: FAR1-related sequence 3 (TAIR:AT2G27110.2); Has 1793 Blast hits to 1580 proteins in 47 species: Archae - 2; Bacteria - 0; Metazoa - 4; Fungi - 136; Plants - 1646; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR