K35649

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35649

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35649

Determination of introduced cDNA(s)

J023149C09 - Rice Full-length cDNAs - Original: J023149C09

full reading [+] show sequence

GAGTATAACT CGACGCCCCC ACTCGCTCTC TCCCCCAACC CAATGACAGC 
ATCAGTATTC CAGTAGCAGC GGAGAGAGAG AGGGAGCGGC CAACCAAAAG 
CCCAAGCCAA GCCAACGCCG CGTCGCGTCT CAGCCAGCCA GCGAACTGCC 
TCCCCGCCGC CGCGCTCGCC GGCGAACTCC CCCCACCTCC GGCGGCCCGG 
CCCGGCCCGG CCCCGCCTCG CTCCCCGGCA TCAGGTGTGA ATATGTCGGA 
CAGTGCGTTG AAAGATCTGA ATCTAGCTCA GTCAGCAGAG CTGGAGAAAA 
CCAAGGACAG TTCTGCCAAG TCTTGCATCA CCAAGCCTGT CTTGAATGGC 
AACAAATGCA ACAATACGGA AGAAAATGCT CCACCTGTAC TCCCTGATGC 
TGTGACTAAT GGGTGTGAAG CTGGAAATGC AGATGTTGAG TATATTGATT 
CTGAGAGTCT GACAGATCTT GAAGATGCTG GTGCAACCCT TAGTACTTTA 
GTTGCAAGGT TGGATTCAAA AGACTGGGTT ATGACATGTG AAGCTCTAAA 
TAATGTTCGT CAGTTGGCAA TATTTCACAA GGATAGATTG CAGGAACTTC 
TGTTTATTCT CTTCGATTGC TTGTATCTCA AAACACTCAA GAATCCAAGG 
AGTGCTGCCT GTAAAGCTGC ACTCATGACC TGTTCTAATC TTAATTTTTG 
GATTTGAATT ACAGAGAGCC TCTAGTTCCT CTTATTGTGA AATCTGTCAA 
GAATCCAAGG AGTGCTGTCT GTAAAACCGC ACTCATGACC TGCGCTGATA 
TTTTCAAGGC ATACGGTGAC CTAATGGTTG ACTCAATTGA TCCACTGTTA 
GTGCAGCTAT TTCTGAAATC TTCACAAGAT AAGCGTTTTG TCTGTGAAGC 
TGCTGAGGCA GCCCTCATAT CGATGACAAG CTGGATCGCC CCTTCTGCTC 
TGTTGCCAAA AATGCAACCT TACCTTAAGA ACAGGAATCC ACGAATTCGA 
GCAAAAGCAT CAATGTGCTT CAGCAAGAGC GTCCCAAGCT TGGGTGTGGA 
GGGAATTAAA GAATATGGAA TGGATAAGCT TGTTCAGATC GCAGCAACTC 
AGCTTAGTGA CCAGCTTCCT GAATCCAGGG AGGCTGCTCG CAAGCTGGCT 
TTGGAGCTAC AAGCATTCTA TGAGAAATCC CAAGCTTCGA GTTCTGGTGA 
AGTTGACGAC GCACCTGCTA CCTCACCTGA TGCTGATGCT GATGCTGGTG 
CTGAATCATG GGAAGCTTTC TGCCAATCAA AGCTTTCCCC ATTAAGTGCA 
CAGGCAATCC TTCGTGTCAC CTCTACGACG AAAGAGGGTG TGGCTGTGGG 
TGTCACCTCT ACCCCTCCGA AAGAAGGCGT CACTGTTGGT TGCTAGCATC 
AGGAGGTAGT AGATGCAATG AGGTTGTGGT TTTTCCATCC GATTCACCTT 
TTGCTGTACA TGGTTATGGT TGTTCTTTCT CTACATCCAA TCTGGGATTC 
GTTCGTTAAG CATCGGTTCG AGAGTTGAGG TGTGACCTGT GGGTGTTAAT 
ATTGGTGCGA GATATACCTG TTATAGTTGA CCGTATGATC TTCCTTTTCT 
CCCACTGCTT GGTATTGATT GGTCAGGCGA ATTGTAGAAT TTCTTCCACT 
ATTCAATATT ACTACACAGT AATTTTTCC

Gene models with high sequence identity

AT5G14790.1 [+] show detail - ARM repeat superfamily protein
E-value: 1e-68; Score: 257.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	CLASP_N	6.40000000000001e-05
superfamily	Armadillo-type fold	4.8e-13
HMMPanther	PTHR21567	7.20002719778986e-38

See the detailed result >

AT5G14790.1

Model type: Protein coding
Short Description: ARM repeat superfamily protein
Computational Description: ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT3G01450.1); Has 322 Blast hits to 322 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 157; Fungi - 10; Plants - 125; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).
Link: InterPro Scan - TAIR