K35802

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35802

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35802

Determination of introduced cDNA(s)

  • J013042A04 - Rice Full-length cDNAs - Original: J013042A04

    full reading [+] show sequence

    Nucleotide sequence: J013042A04 - full reading 
    GATTCTGAAT TCCGCACTCA GATTTTCGGG CGAGAAGACG AGTGACCAAG 
    TTGGGACGGG AGCACGAGCG ATTGGCGCAG GGCAGATTCA TCAGGTGCGC 
    GCGAAAATCA TCCTCTTTTC GCCATCTCTC CGATTAGCCT GCTTTGATTC 
    CGTACGCGTT CATGTTGAAT CGATGTCTTA GATCGGGCTT GTTTGGTTTG 
    GCCGATTTAG AATTCTGGGA TGGGTACCGC TTCTGTTCCA GATCTTGCTG 
    TTCAGAATTC AGATTGGCTG CGGGGGGTTT GATGTGATGT TAGGATGTGT 
    CATGAAGGGA AATCGAATTG TTTTATCGAA GTATTTCTGT TGTAGTTCTA 
    GTGCTTTGTC AGGATCTGGG AATGGATCTG AATTCTTGAT AAGATGTTCG 
    TGTGTTACCT CATATATCGC GTGTCACTCA TGATCTTCTC TGCGGATTTT 
    TGTGGGGGAT CATTTTGTCC GTACCAACAT ATTTGCTCAA AATTCTATTA 
    CGAAATCTCT CCTCCATGTT GTTTGTTCAT ATTCCAGCGT AAGAAATTGG 
    TTTCATGTAG CGTAGCTTGT GTTGCAGCAA TGAATATGCT GCCATCCCTG 
    TACATACACA GACACTATAC TTGTTTTACA GTTCTTACAC TTGGGCAGCA 
    TCATGTCAAT GGGTGTTTGG CCAAGCCCAG GACAGCCCCA AAATTTTTCA 
    GCAGAATTCT GGGACTAGTT GTCATTTTTT CTTTTTCTGT GGTAAATTTA 
    ACTTAAGCTT GTTTAGTTAT AGTTATGCAG CATCCAGGAG CAGTTAGTTT 
    GATAGATTAT GAATGTATAT AGGCATGAGC AACAGCAACC ATTTCTTTTT 
    TATATTTTTA TTAGCACTCA AATGTGACAA CTAAAACTTC ACTGGTATTG 
    GTGTAGTACT ATCATACACT TCCAAGATGT GTACCTTATT CTGCCTTCTG 
    ACATATTCCA CATTGAAGAA ACTTCTGTGC TTCTTATTTT GCCTTTTGAC 
    ATATTCCACA TTGAAGAAAC TTCTGTGCTT ATAAAATAGT CACTTCCAAA 
    ATGCTGTGTG ACAGCATAAA CCGTATCTTC CAAAATGATA GACATATTTT 
    AACACTTCCT ATGTATATGC AATACGACTT TGGATGAAAC TCTGTTGTTC 
    TGTTGGTTTT CTGTAATATT AGTGCTGCAA ACCTTACATT TGAAACTCAT 
    ATTATCATGC AGAGGGATAA AGCAAGATGG TGGCCAATGG AGATGCCCCG 
    GCTAGAGGGA GTGCAGCAGC TGCTGCAAGC TTGCGCAGGC GTAGAACCAC 
    CAGCAGTGGC ACTGGTGGAG GCGGTGCCAG CACAATGCTC CAGTTCTACA 
    CCGATGAGGC TGCTGGGCGC AAGATGTCCC CGAACTCAGT CCTCATCATG 
    AGCATTGGGT TCATTGCCGT CGTTGCTCTT CTGCATGTTT TCGGCAAGCT 
    TTACCGCACC TCCGCCTAGG CTGTCATTAT CTTACCCGCA TGCGAAATTT 
    GTCAACAGAG GAACCCGTAG CCTAATGGAA TAGCAAATGA CTATCAGAGT 
    ATGAAAAATT TTGCTGTTAC CATCATACCA TGGAATCTTA TATAGTACCT 
    TACAATACTA ACCTGTTGTG GTTCTGTCCT TACAAGTCGT TTTTGGTCAT 
    TGCTAATAGT TAAGTCTTAT GTTAGTTTCT GTAGTTCTGT CATATTTCTG 
    CTCTTATCTT TATCAGTCCT TTTCTTACCT GTGGCCATCT CCCCTTATCT 
    CTGAAGTTGG GGCACTTGAT CCTTTTGTTT ATATCTCTAT ATGTTAAGGA 
    TCTGAAGCCC AACACTACAA TGCAGTATGT GTTTGTTGTT TGAAAGACAG 
    TTGGATTGAC ATGACATTCT ACCAGTGGGA TGTTTGAATA AATTCAAATA 
    CTGAAT

    Gene models with high sequence identity

    1. AT3G60540.2 [+] show detail - Preprotein translocase Sec, Sec61-beta subunit protein
      E-value: 9e-11; Score: 65.90

     

    InterPro Scan Digest

    Program Description E-value
    HMMPIR Preprotein translocase Sec, Sec61-beta subunit, eukarya 2.4e-21
    HMMPfam Preprotein translocase Sec, Sec61-beta subunit 1.3e-17
    HMMPanther SEC61BETA-PROV PROTEIN 4e-23

    See the detailed result >

    AT3G60540.2

    Model type
    Protein coding
    Short Description
    Preprotein translocase Sec, Sec61-beta subunit protein
    Computational Description
    Preprotein translocase Sec, Sec61-beta subunit protein; CONTAINS InterPro DOMAIN/s: Preprotein translocase Sec, Sec61-beta subunit, eukarya (InterPro:IPR016482), Preprotein translocase Sec, Sec61-beta subunit (InterPro:IPR005609); BEST Arabidopsis thaliana protein match is: Preprotein translocase Sec, Sec61-beta subunit protein (TAIR:AT2G45070.4); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR