K35814

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35814

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35814

Determination of introduced cDNA(s)

  • J023088P13 - Rice Full-length cDNAs - Original: J023088P13

    full reading [+] show sequence

    Nucleotide sequence: J023088P13 - full reading 
    GGCCTACAGG CGCAGGAAGA GGAGGAGAAG AAGCGGAAGA GGAGAGAAAA 
    AAAAAATTCG CAGCAAAAAA GAAAAAAAAA TCGCAGCTGC AAGGTAGAGG 
    AGGAGAAGTT GGGGTTTGGG AGGGCCAGCG ATTGAGCCGA CGAACTCAAG 
    GTTCTTCAAA GTGATGATTG GGATCGAACC CTGGTAACCT CCATGTCTGG 
    GGCGCCATGC TCCAACCTTG GACTTGTTCC CAGGGATATG CATGGTAGTA 
    TCCCTATTAG CACTACAAAT TCCTCTGGGC CAAGCATTGG TGTTAGCTCT 
    TTGGTGACGG ATGCTAACTC ATCGCTCTCC GGAGGTGCCC AGTTGCAGCC 
    AATTATTGAT GGTCCCATTG TGCAACAAAG TCCTCCCCAA GAGCAGATGC 
    AGAAGCGAAG GTCTTCTAGT GTAACATCAC AACCTGTTAT TGATGCTGCT 
    GGTGCATTGC ATGCTCAGAA GAAGTCAAGG GTTGATATTA GGCAAGATGA 
    TATCCTGCAA CACAATTTAA TCCAGCAACT GCTCCAAGGC CAGAGTTCTC 
    TTCATCTGCA GGGTCAACAG AACCCTCAGA TTCAAGCCTT GATCCATCAG 
    CATAAACTGG CACAGATTCA GCAGCAACAG CAGCATCAGA TGTTGCAACC 
    ATTTTCACAG ATCCAACAAT CTCAAGTTGG CATACCTCGG CAGCCACAGT 
    TGAGGCCTCC ACTAGCGCAG CCTGGAATGC AGCTAGCTGG ACCTGTTAGG 
    ACTCCTGTCG AGAATGGGCT TTGTTCTCGA AGGTTAAAGC AATACTTATA 
    CCATAAGCGT CACCGACCAG AGAATAATCC AATAACATAC TGGAGGAAGC 
    TTATTGATGA ATATTTTGCA CCACGAGCAA GAGAAAGATG GTGTGTATCC 
    TCGTATGAGA AAAGAGGAAA TCCTTCAGGT GCTGTTCCAC ACACAGCTCC 
    GGATTCATGG CGCTGTGACA TTTGTAATAC ACATGGGGGC AAAGGATATG 
    AGGCTACCTA TGAAATACTT CCTAGACTCT GTCAAATTAG ATTTGACCAT 
    GGTGTTATAG ATGAATACTT ATTCCTTGAC ATGGCCAATG AATTCCGGTT 
    GCCCAATGGA CTAATGCTGC TGGAACATAC TAAAGTTGTT CAGAAAAGCA 
    TTTATGAACA TATGCATGTG ATACACGAGG GGCAGTTGAG AATCATATTC 
    ACACCAGAAC TGAAGATAAT GTCCTGGGAG TTCTGTTCAC GGCGACATGA 
    TGAGTATATC ACTCGCAGGT TTCTTTCACC CCAGGTTGCT CATCTGCTGC 
    AAGTTGCCCA GAAATATCAA ACTGTTGCCA CTGAAAGTGG TCCAGCTGGG 
    GTCTCAAACA GTGATGCACA GAACATTTGC AACATGTTTG TGACGGCGTC 
    ACGACAGCTA GCGAAAAATA TAGACCACCA CACCTTAAAT GAGCATGGTC 
    TATCTAAAAG ATATGTTCGC TGCTTGCAGA TATCAGAGGT GGTGAATCAC 
    ATGAAAGACC TGATTGAATT CAGCCACAAG AACAAGCTTG GTCCTATAGA 
    GGGTCTGAAG AGCTATCCCA AGCAAACTGC AGCAAAACTT CCAGTACAAA 
    ACATGCACGA GCCAAAGCAA CTAATGGCAG CTGCTGGCCT TCCTAATGAC 
    CAGACTAACC TCAAAGCCAT GGGTGTCAAA ACAGAAATGA ACACCCATGC 
    GAATGAGACG CACGGTATTG GACCAATTGG AAATGGTCCG CAGAATGCTG 
    CTGCACTTAA CAATTACCAG AATCCCATTG GAAATGGTCT GCAGAATGCT 
    GCTGCACTTA ACAATTACCA GAATATCCTT AGAAGTTCAG TCGCAAACCA 
    GAGTTTGCTT CAGCAGGAGG CATCAAGCAT GTTTAAAGGT CCCACAGCAA 
    TGCACAATGG CATTCAGCTG GAAGCATCTA GATCCTTCCG TGGACCAAAC 
    CAGGTGCATC TCGCGCAGTT CCAACATCCG GCCTCATTTC AGCAGCCTAT 
    GCCTCAGCAG AGCAGCCTCC AGGGCTTGGG TGTGAGCCCA CAATATCAGC 
    AGCATGTGCT CCATCAGTTG CTGCAAGAGG CCAAGAACAC TAACAACCGT 
    GTCTTGGCGC AGCAGCAGCA GCAACAACAA CTTCAACATG CTCCTGCTAA 
    CAGTGGTCTT GCATCAGGAG GAACGGCTAT CACCGGCAGC GCCGCTAGCG 
    GGGATCATAT GAATAACAAC GGCGCGGTGA AGGGTGGGAC TCCAATGGTT 
    ACAACAGGTC CTAGCAGTGT GATCAACAAT ACAGCCAGCA TCCTCCCCAG 
    CAGAAGTAAC AGCTTCAAGT CAGTGAGCAG CAACCCCCAA GTTGCAGCTG 
    CTGCGGGCGG CGGCATTGGC AGCGGCGGCC ATGCGGCTAC CCCCAAGGCT 
    GATGCTCTGC ATGAGTTGGA TGATCTTGAC AATCTTGGGA ATCTGATCAG 
    TACTGAACTG GAGGAGAGTG GGCTGTTCCT GGGTGACCAG GCAGGTGGTG 
    GCTACTCATG GAACATGTGA CAAATGCTTG CCTGCTTGGC TTCTTGGTGA 
    TGATGGAAAC TGCCGTAGAT TCTAGCTTCT CGTCTTGTTC TTTTTTGTTT 
    TGGGTATGTG GAGTTTTTGT TTGGGGTGTC TGAAACAGTT TCTGATGATG 
    ATGATACACT GATGTAATTT AAGCGTTATG TGCGCTGGTA AGTGAGTTGG 
    CTTGGAATGC TGAGATCGAA CCAGAGCTGC TTCTGCTAGC ACACATCGAG 
    GCCCATCATA CTGCTGAATG ACAACGTCTG GCGATTACTA TTATTTACTT 
    TAGTGGTAGT ACTATTATTT TAATTTTTGT ATCTTTATAA TGCCATATGA 
    TTGTCGATTC AGCGAAGAAA TTTTTATAGT AGGATTTACT CCAAAATCCT 
    GGAATGGAAG GATTTTGCAC GAGTTTTCTG GGATTTGAAA TAGTTCCTGA 
    AAGAAAAAAC CCGCCTGTAA TCTGCTGTAT ACAGAGTTTT TGATTTTCGA 
    CTATGTTTAA TTCAGGTCAG GTTGGAAGGG TTTTATTCC

    Gene models with high sequence identity

    1. AT5G62090.2 [+] show detail - SEUSS-like 2
      E-value: 2e-98; Score: 357.00

     

    InterPro Scan Digest

    See the detailed result >

    AT5G62090.2

    Model type
    Protein coding
    Short Description
    SEUSS-like 2
    Computational Description
    SEUSS-like 2 (SLK2); BEST Arabidopsis thaliana protein match is: SEUSS-like 1 (TAIR:AT4G25520.1); Has 38958 Blast hits to 16422 proteins in 905 species: Archae - 6; Bacteria - 1880; Metazoa - 14538; Fungi - 4050; Plants - 2632; Viruses - 363; Other Eukaryotes - 15489 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR