K35929

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35929

Determination of introduced cDNA(s)

J023118A09 - Rice Full-length cDNAs - Original: J023118A09

full reading [+] show sequence

GTCCAAGAAA AAAAAAAGGA AGAAATACTC GTATGCATTT TGTTGCGCCA 
TAGCCGCTAG TCCCCGGCTC CCCGCCCTTC CCACCCCTAT CCCCGCCGCC 
GCCACTCCCT CCCCGGCCAT CGCCGTCGCC GTCGCCGTCG CCGCTGCAGC 
CGCCAGCCAT GCTCCACCTC CAGAAACACC TCCTCCTCCT CTCCCTCCCT 
CCCCGCGCCA CCGCCTCCAC CCTCCTCTCC CTCCGCCACC ATGGCCTCTT 
CTCCCTTACC CGCTTCTCCG CCGCCGCCGC CGCCGCTAAA TCCGCCGGCC 
ACTTCGCCGT CGAGGAGTAC CTCGTGGCCA CCTGCCACCT CACCCCCGAC 
CAGGCTACCA AGGCCTCCAA GTCCATCTCC CACCTCAAGT CCCCGTCCAG 
GCCCGACGCC GTCGTCGCCT TCCTCGCCGG CCTCGGCCTC TCCGCCGCCG 
ACATCGCCGC CGCCGTCGCC TACGACCCGC GCCTCCTCTG CGCGGAGGTC 
GACAGGACGC TCGCCCCGCG CCTCGCGGAG CTCGCGGGCC TCGGCCTCTC 
CCCCTCGCAG ATCGCGCGCC TCGTCCTCGT CGACCCCGCC CGCTTCCGCC 
GCCCCACCGT CATCTCCAAG CTCCAGTACT ACGTCCCGCT GTTCGGATCC 
TTCGAGACCC TCCTCCAGGC GCTCAAGAAC AACTCCTACC TCCTCAGCTC 
CGACCTCGAG AAGGTTGTCA AGCCCAACGT CGCGCTCCTG CGGGAGTGCG 
GGCTAGGTGC TTGTGATATT GCTAAGCTGT GCATCCCGTT GCCGAGGCTG 
CTCACCACCA GCCCAGAGCG TGTCCGAGAT ATGGTGGCTC AAGCAGAAAA 
CGTCGGCGTG CGCCGTGGCT CCAAGATGTT CAGGCACGCT ATTCTGGCCG 
TCGCGTACAT CAGCGAGGAA AAGATCGCCG CCAAAATGCA GTTCTTGATG 
AAGACATTAA AGTGGTCAGA CGCAGAGGCG AGGATTGCGG TGTCCAAGCT 
TCCTGTGGTG CTGAGGAGCT CGGAGGACAA GCTGAGCCGT GTGTCGGAAT 
TCTTGATCTC TGAGGTCGGG TTGGAGCCGG CATACATTGC TTACAGGCCG 
GCAATGCTCA CTTATAGCCT GGAACGCCGG CTCATGCCCC GGCACTGCGT 
TCTGAAGTAT CTTAAGGACA ATGGATTGAT AGAATCCGAC AAGAGCTACT 
ATAGCGCGGT CCAGGTGACC GAGGAGGTCT TTGTGGAGAA ATACATAAGT 
CCATACGAGG ACACTGCGCC GCACCTTGCT GAAGACTATG CTGCTGCATC 
CAGCGTAAAG ATACCCACCA GATTCAGATT GAAAGGACCA AAAACAGGCC 
ATGCAAGTGC GCAAACTGCC TAATTCTTGC CACGAGTAGT GAGCTGGTAA 
GTCCTCTTGC AGTGTTCTTT GCCTGACTGG TTGTTGAGTG CGCTGGTTTT 
GCTGTTGCTA GCCACCAACA GAACTGAACT GATAATTAGA TTCTTGAATT 
AAGATATGCC ATCTGGTAGA TATGTAACCA TGGCACTGTT ATGAACCGGT 
TCATCGTTTT GTCACATGTG TGCAATCGTT CATTCGAATG GGCTCATCCA 
TCTGTGGTTG TATGAATTTG CCAATGAAGT CATCTGGTAG ATATGTGGCA 
CCGTTATGAA CCAGTTCATC GTTTTGTCAC ATGTTTTGCA TATTGTTC

Gene models with high sequence identity

AT5G07900.1 [+] show detail - Mitochondrial transcription termination factor family protein
E-value: 2e-33; Score: 140.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Mitochodrial transcription termination factor-related	5.6e-22
HMMSmart	Mitochodrial transcription termination factor-related	13
HMMSmart	Mitochodrial transcription termination factor-related	0.38
HMMSmart	Mitochodrial transcription termination factor-related	14
HMMSmart	Mitochodrial transcription termination factor-related	2.6

See the detailed result >

AT5G07900.1

Model type: Protein coding
Short Description: Mitochondrial transcription termination factor family protein
Computational Description: Mitochondrial transcription termination factor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT1G21150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR