K35936

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35936

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35936

Determination of introduced cDNA(s)

  • J023064J03 - Rice Full-length cDNAs - Original: J023064J03

    full reading [+] show sequence

    Nucleotide sequence: J023064J03 - full reading 
    GTTTTTTCAA CAATCCTCAA CCTTCGGAGG CTAGTTTGGC AGAAGAATCA 
    ATTTCTACAA ATGGTCAACA GATCGAGCAG GAAATGCCTG TAAATGTTGA 
    ACCATCAGAT CTATCAGTTG ACAAAAGTAT TCAACATGCA CTGGTAGTTG 
    GTGATTATAA AGGAGCAGTC AATCTGTGCC TTGCTGCCAA TCGAATGGCT 
    GATGCTCTGG TTATTGCCCA TGCTGGTGGT TCTGCTCTAT GGGAAAGCAC 
    AAGAAACCAG TATCTTAAGA ATACTGTATC ACCCTATCTA AAGGTTGTTT 
    CTGCTATGGT TGGCAATGAT TTGATGAGTT TTGTGAGTAC ATGGCCATTG 
    AATGCTTGGA AGGAAACACT TGCGCTACTG TGCACATTTG CCAGGAAAGA 
    GGAATGGAAT GTTCTATGCG ATACCCTTGC ATCTAGACTG TTGGGAGTTG 
    GAGATACACT AGCTGCGACT CTCTGTTATA TTTGTGCTGG AAATATCGAC 
    AAAGCTGTGG AAATATGGTC TCGCGACTTG AAGTCTGAAG ATGGTGGGAA 
    GACTTATGTT GATCTTCTCC AGGATTTGAT GGAGAAGACC ATTACTCTTG 
    CCCTTGCTAC AGGGCATAAG AGCTTTAGCG CGTCACTGTC TAAGCTTGTG 
    GAAAACTATG CAGAACTTTT GGCCAGTCAA GGCCTTCTTA AAACTGCAAT 
    GGAATACTTA AAATTGTTGG GATCAGATGA ACATTCACAC GAGCTGGCAA 
    TATTGAGAGA CCGGATTGCA TTTTCTACAG AAGAGAATCA TGCTGCCAGT 
    ACTTCAGTTC ATGCGGGCAG TATTAACAGT TCCGCGTACC CTACAATTCA 
    ACCGAGCTAT AGCACCCCAG ACCCTTCTCA GAACCTTTAC CAGGGGACTT 
    CACAATATGC TGTGCCAAGT AACCAGTATC AAGATTACCA GCAACAATCT 
    AATACAGCAT ATGGAACATA CAACAGTACA TATTCTCAAC AACCAACCCA 
    GATGTTTGTT CCATCAAACA CCACTCCAGT GATCTCCCAG CCAAATGCAA 
    CTCCAGCACC AGTTCCACAA CAACCAGTGA AGGCATTTAC TCCTACCAAC 
    TTGCCAGGTC TAAAAAATCC TGAGCAATAC CAGCAACCAA CTTTGGGCTC 
    CCAGCTTTAT GCGGGTGCTA ATCCACCATA TACTTCTGGA CAATCGACTC 
    CATATCAAGG TGTACCTCCC ACCACATACC ATCAGCCTAG ACCACCTACA 
    CAATTCCAAA CAGTTCCCAC AGCACCTCCA GCTGTTTCTA GTGCCACTGT 
    ACCAGGAACG ACCCCAAGTC AGATGTTCCC TGGTCCAGTT GCTAATAACC 
    CGACTTCCAG GTTTATGCCA TCAAACAATC CAGGTTTTGT TCAAAGGCCA 
    GGTTTGAGTC CTGTACAGCC CTCAAGTCCA ACACAGGCAC AAGGACAACC 
    GCAGCCTGTT GTTGCACCTC CTGCACCTCC CGCAACTGTG CAGACAGCTG 
    ACACATCGAA GGTGTCTGCT GAGTTGAAAC CAGTTATTGC TACATTGACT 
    AGACTATTTG ATGAAACATC TAAAGCTATG GGTGGATCAC AAGTTAAAAA 
    ACGTGAAATC GAAGACAACT CAAGAAAGAT CGGAACACTA TTTGCAAAAC 
    TCAATTCTGG GGATATATCT CCAAACGTTT CATCAAAACT CATTCAGCTT 
    TGCAGTGCAC TTGATAGCGG TGATTTTGCC ACTGCGATGC ACCTTCAGGT 
    ACTTCTGACA ACGAGCGACT GGGACGAGTG CAACTTCTGG CTTGCCGCAT 
    TGAAGCGTAT GATCAAGACG AGGCAGAATT TCAGAATGTA AACGAGTGCC 
    GCGTTTTGCA GCTAGTTCTG TATACACACA CCTTTTCGAC TTCTTACAAA 
    AGTTGTTAGT GTTAGCAACT TATGAGGGTT TGTCTGCACA GTAGTGCTAT 
    CTTGCTTCTT GTGTTCCCTC CTGCCAATTA TACTGAAGCT TGTCGCTTAA 
    AAGTGGTCTG TTGTCTGGGC GATTACTTTT TGATAGTTCT TCGACATTCC 
    TTTGTGAGGA TCAGTTCTTG GGTGATGGTG GTTGGATTTC ACGAGGATTA 
    CTTGTAAGTG GGCATCTAGT TGTTATAGCT GGCCCATTTT GTTTTACCTT 
    ATAAGTTAGA TTTTACCTGT TTGGACATTG GAAGTACTCT CGATAATTAA 
    TACAAGGATA TTGGCTTGTT TATTGC

    Gene models with high sequence identity

    1. AT3G63460.3 [+] show detail - transducin family protein / WD-40 repeat family protein
      E-value: 8e-142; Score: 501.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SEC31 4e-208
    HMMPanther SEC31-RELATED PROTEIN 4e-208
    HMMPfam SRA1 2e-07

    See the detailed result >

    AT3G63460.3

    Model type
    Protein coding
    Short Description
    transducin family protein / WD-40 repeat family protein
    Computational Description
    transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G18830.1).
    Link
    InterPro Scan - TAIR