K36220

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36220

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36220

Determination of introduced cDNA(s)

  • J013126N07 - Rice Full-length cDNAs - Original: J013126N07

    full reading [+] show sequence

    Nucleotide sequence: J013126N07 - full reading 
    GTGAGGTAAG CTAGCTAGTA CTAACGACCT CGCACGCTGC TCTCGCAAGC 
    TCTCTCGGCC ATGGCGGTCG GCACAGTTCC CGATAGCCAG GATCTTCCAC 
    GCCGCTATGG TGGAAGGGTC ACCACCTTCG TCGTGCTCTC CTGCATCACC 
    GCGGGCATGG GAGGCGTCAT CTTCGGCTAT GACATCGGCG TCTCTGGTGG 
    TGTGACCTCG ATGGACGGAT TCCTGAGCAT GTTCTTCCCG GAGGTATACC 
    GGCGGATGAA GGGGACTAGC GTCAGCAACT ACTGCAAGTT CGACAGCGAG 
    CTGCTCACCG CCTTCACGTC ATCGCTCTAC ATCGCCGGCC TCCTCACCAC 
    CTTCCTGGCT TCGTCAGTCA CCGCTAGGTG CGGCCGCCGG CCGTCGATGG 
    TCATCGCGGG GAGCGCGATC CTCGCCGGCT CAGCGATCGG AGGAACCGCG 
    GTGAATGTCT CCATGGTGAT CTTGGGCAGG GTGCTGCTCG GCGTCGGGCT 
    GGGCTTCGGC AATCAGGCCG TGCCGCTGTA CCTGTCGGAA ATGGCTCCTC 
    CGCTGCACCG AGGAGCGTTC AGCAACGGCT TCCAGCTCTG CGTCGGCATC 
    GGCGCCGTCA CTGCCCGCCT CACCAACTTC TTCACGCAGA AGATCAGGCA 
    AGGCTGGGGA TGGCGCGTCT CGCTCGCCGT CGCCGCCGTC CCCGGCGGGT 
    TGCTCACCCT CGGCGCGCTC TTCCTCCCGG AGACGCCCAA CAGCCTACTG 
    CAGCAAGGCA GAGACAAGCG CAGAGTTAGG GTGCTTCTCA CCAGGATCCG 
    AGGTGTCAGC GACATGGAGG ACGAGCCGGA GGACATTGTG GCCGCCAATA 
    GCGACAAGGC GAACAGCAGC CGCGGCCTGC AGATGATCGT CACCCAGCGG 
    CAGTACCGTC CCCAGCTCGT CATGGCCATC ATGATACCCT TCTTCCAACA 
    GGTGACCGGC ATCAACGCGA TTTCGTTCTA CGCGCCGGTG CTGCTGCGCA 
    CGATCGGAAT GGGGGAGAGC GCGTCGCTGC TGTCGGTGGT GGTGACGGGC 
    TTGGTCGGCA CGTCGTCGAC GTTCGTCTCC ATGTTCCTCG TCGACCGGTA 
    CGGCCGGAGG ACGCTCTTCC TCGTCGGCGG CGCCCAGATG CTGGTGTCAC 
    AGCTCATGAT CGGAGGCATC ATGGCCACCC AGCTGGGCGA CCACGGGCAG 
    GTGAGCAAGA CGTGCGCGCT GGTGCTCATC TTCCTCATCG CCGTCTACGT 
    GGCCGGGTTC GCGTGGTCGT GGGGCCCGCT CGGGTGGCTG GTGCCGAGCG 
    AGGTGTTCCC GCTGGAGGTG AGGTCGGCCG GGCAGAGCAT CACGGTGGCG 
    GTGAACTTCC TGATGACGAC GGCGGTGGCG CAGTTGTTCC TGGCCACGCT 
    GTGCCGCATG AGGGCCGGCA TCTTCTTCTT CTTCGCGGCG TGGCTGGTGG 
    CCATGACCGC CTTCGTCTAC CTCCTGCTGC CGGAGACCAA GGGCCTACCC 
    ATCGAGCAGG TCCGGAGGCT GTGGGCGCAG CACTGGTTCT GGAGGAGGTT 
    CGTCGACACC GCCTCCAACG GGGAGCAAGC TAAGCTAGAC TGCTAGCGCC 
    AGTAACTTTG ACAACTCTGC ACAATCGATC ACAGTTAACT AGTCAATAGT 
    TACTACTCCC TCCGTTTTAG GCTACGATAT GTTTCAAAGT CAAAATGTTT 
    TAAGGGTCTG TTTAGGGGAG CTTTTGGTTC TGAGAAGCAG CTTGTTAGTA 
    GACAGGTTTC CCAACTTTTG TCTTTTAGTT CATTTTCTAT ATTCT

    Gene models with high sequence identity

    1. AT5G61520.1 [+] show detail - Major facilitator superfamily protein
      E-value: 2e-145; Score: 513.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Sugar/inositol transporter 9.1e-30
    FPrintScan Sugar/inositol transporter 9.1e-30
    FPrintScan Sugar/inositol transporter 9.1e-30
    FPrintScan Sugar/inositol transporter 9.1e-30
    FPrintScan Sugar/inositol transporter 9.1e-30
    HMMPfam General substrate transporter 5.9e-111
    HMMTigr Sugar/inositol transporter 3.8e-93
    HMMPanther MONOSACCHARIDE TRANSPORTER, PLANT 1.3e-178
    HMMPanther SUGAR TRANSPORTER 1.3e-178
    superfamily Major facilitator superfamily, general substrate transporter 2.3e-51
    PatternScan Sugar transporter, conserved site 0
    PatternScan Sugar transporter, conserved site 0
    ProfileScan MFS 44.875

    See the detailed result >

    AT5G61520.1

    Model type
    Protein coding
    Short Description
    Major facilitator superfamily protein
    Computational Description
    Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G34580.1); Has 24946 Blast hits to 24488 proteins in 1831 species: Archae - 380; Bacteria - 10823; Metazoa - 3430; Fungi - 6555; Plants - 2609; Viruses - 0; Other Eukaryotes - 1149 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR