K36224

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36224

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36224

Determination of introduced cDNA(s)

  • J023129D13 - Rice Full-length cDNAs - Original: J023129D13

    full reading [+] show sequence

    Nucleotide sequence: J023129D13 - full reading 
    GCATTATTGA TTCTTGCAAG GAGGAAGAGC AGCTAGAGGC GAGGCAAGAA 
    AAGAAGTGAA ATCTCTCCGT TAGACAGGAA GAGGAAAAGC AAGGGGGAAT 
    TGGGGATGGC GTCAAAGAGG ATACAGAAGG AGCTCAAGGA TCTGCAGAAG 
    GATCCCCCTA CATCATGCAG TGCAGGTCCT GTTGGTGAAG ACATGTTCCA 
    CTGGCAGGCA ACGATAATGG GTCCATCTGA TAGCCCATAT GCTGGTGGAG 
    TTTTCCTAGT TACCATCCAC TTCCCTCCTG ATTATCCCTT CAAACCACCC 
    AAGGTGGCGT TTCGCACCAA GGTTTTCCAT CCAAACATCA ACAGCAACGG 
    GAGCATTTGC CTTGACATCC TTAAGGACCA ATGGAGCCCA GCACTAACCA 
    TTTCCAAGGT GTTGCTGTCA ATCTGTTCCC TGCTGACTGA TCCGAACCCT 
    GATGATCCTC TGGTCCCTGA GATCGCCCAC ATGTACAAGA CAGATAGGCA 
    CAAGTACGAG AACACAGCAA GGACCTGGAC TCAGAGGTAC GCCATGTAGC 
    ACCTCAGATA TCGATGGACA TGTCGATGTT GTAACAACAT TATCAACGGG 
    TGTGTCTCCC TCTCGCCTTG TGTGGTGTAA GGATCAAAAC CGGCTTTGCA 
    GTGCACTCTT GGTGTTGCTC CATTGTGTCA CTCACTCATT GCAGTGATTT 
    CGAATAGTAT CAAACTGGTG GTTTTTTTCG GTCAGATAAT GTTTGCAACT 
    TGCC

    Gene models with high sequence identity

    1. AT4G27960.2 [+] show detail - ubiquitin conjugating enzyme 9
      E-value: 2e-82; Score: 301.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Ubiquitin-conjugating enzyme, E2 2.8e-53
    ProfileScan Ubiquitin-conjugating enzyme, E2 48.743
    Gene3D Ubiquitin-conjugating enzyme/RWD-like 9.4e-61
    PatternScan Ubiquitin-conjugating enzyme, E2 0
    HMMPanther UBIQUITIN-CONJUGATING ENZYME E2 1.6e-113
    HMMPanther UBIQUITIN-CONJUGATING ENZYME E2 1.6e-113
    HMMSmart Ubiquitin-conjugating enzyme, E2 1.6e-78
    superfamily Ubiquitin-conjugating enzyme/RWD-like 1e-67

    See the detailed result >

    AT4G27960.2

    Model type
    Protein coding
    Short Description
    ubiquitin conjugating enzyme 9
    Curator Summary
    ubiquitin conjugating enzyme
    Computational Description
    ubiquitin conjugating enzyme 9 (UBC9); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 10 (TAIR:AT5G53300.4); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR