K36426

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36426

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36426

Determination of introduced cDNA(s)

  • J013120F11 - Rice Full-length cDNAs - Original: J013120F11

    full reading [+] show sequence

    Nucleotide sequence: J013120F11 - full reading 
    TAGTTTGTTT GTTCGTTCGT TCCCCCAAAA AATTTGGATC CGCCTCTGCA 
    GATTGGTGCC TTCCTTCCGC TGGAGGCAAC CCCCCCCCCC TCCCTTGTAC 
    GCTTCGTCTT CGTCTCCGGC GACGAGCGGA AGCAAACCTT CTCCGGCGAG 
    CAGCAGGATG CAGGTGAAGC AGAAGGTGTA CGAGCTCTAC AAGGGGACGG 
    TGGAGCGGGT CACGGGCCCG CGCACCGTGT CGGCCTTCCT CGACAAGGGC 
    GTCCTCTCCG TCCCCGAGTT CATCCTCGCC GGCGACAACC TCGTCTCCAA 
    GTGCCCCACC TGGTCCTGGG AGGCGGGCGA TCCGAGCAAG AGGAAGCCGT 
    ATCTCCCACC TGACAAGCAA TTTCTCGTCA CCAGGAACGT GCCTTGCCTA 
    AGACGTGCTG TTTCGCTTGA AGAAGAGTAT GATGCAGCAG GAGCTGAGGT 
    AGTTCTCGGT GATGATGAGG ACGGTGAAGG CTGGCTTGCC ACACATGGAG 
    TGCAAGCATC AAAGCAAGAA GAGGAGGAAG ACATACCATC GATGGATACA 
    TTGGATATAG GGAAAACTGA AGGGATAAAG TCTATTCCCT CATATTTCAG 
    TGCTGGTAAG AAGGCTGAAG AAGAGGAGGA TATACCAGAC ATGGACACTT 
    ATGAAGACTC AGGGAATGAT TCAGTGGCTA CCGCTCAACC TTCATATTTT 
    GTCGCAGAAG AGCCTGAAGA TGACAACATC CTTCGTACTA GGACATATGA 
    CGTTAGCATC ACATATGACA AATATTACCA AACCCCACGT GTCTGGCTTA 
    CCGGATATGA TGAGTCAAGA ATGCCACTAA AGCCTGAACT TGTGTTTGAA 
    GATATCAGCC AAGATCATGC ACGGAAGACG GTGACTATTG AAGACCATCC 
    TCACTTGTCA GCAGGCAAGC ATGCTTCAGT GCATCCATGC AAACATGCTG 
    CTGTGATGAA AAAGATCATT GATGTTCTAA TGTCTCAAGG AGTTGAACCA 
    GAAGTTGACA AGCACCTTTT CATATTTTTG AAGTTTATGG CCTCAGTCAT 
    ACCCACTATT GAATATGACT ACACTATGGA CTTCGATCTG GGCAGCACAA 
    GCAGATGATT TGTTAATTGA AGGAAAGGGA AAGATCCTGT AGAAGGTGTA 
    CCAAGGCTTA TCATGGTGCC CCAAATAATC ATTGCTTGTT GGAAAGAATT 
    GTATATGCAA TATGTGCGTG CATGTGTGCT CATTCGTTTG GAAAGTAACT 
    GGAAACAATG CAGAAACATC AGGGCTGATT TGCCATGTAC ATGTAACACT 
    ACATACCCGT TTCACTTGAA TTCGTTTGCC TTCCAGATTG AATCCATCTG 
    TTCTTAGATA CACGTTGAGT ATGCC

    Gene models with high sequence identity

    1. AT5G61500.1 [+] show detail - autophagy 3 (APG3)
      E-value: 4e-136; Score: 481.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Autophagy-related protein 3, N-terminal 1e-41
    HMMPfam Autophagy-related protein 3 2.2e-24
    HMMPfam Autophagy-related protein 3, C-terminal 2.8e-14
    HMMPanther AUTOPHAGOCYTOSIS PROTEIN AUT1-RELATED 1.5e-158

    See the detailed result >

    AT5G61500.1

    Model type
    Protein coding
    Short Description
    autophagy 3 (APG3)
    Computational Description
    ATG3; CONTAINS InterPro DOMAIN/s: Autophagy-related protein 3 (InterPro:IPR007135), Autophagy-related protein 3, C-terminal (InterPro:IPR019461), Autophagy-related protein 3, N-terminal (InterPro:IPR007134); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR