K36513

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36513

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36513

Determination of introduced cDNA(s)

  • J013000J01 - Rice Full-length cDNAs - Original: J013000J01

    full reading [+] show sequence

    Nucleotide sequence: J013000J01 - full reading 
    GCCCTTCGCT TTTCTCTATT TCTCTCTCTC TCTCCATCCG CGAGAACTCG 
    TCGGGATATT TATGAGCGCT GGTGGAGTTG CGTGGCGAGG TGAGGAGGTG 
    GCTGATCTCT CTCATCAATC TCCTCCGTCG CGGTCGCAGC TGCGGGAGTG 
    AAGCCGCCCC GCGGAGCTAG CTAAACCCTA GCCACTGCCC GGGCGGAGAG 
    TTGGGGTTTG GGTTGGTGGC GGTGGGCCGG TGGCGGCTCG GTGGCGGAGC 
    TCCGGTGTGG GGTGGTGTGG AATGGAATGG AAGTTATTCG ATGATTTCCC 
    AGGATTTTGA CTAGGCCACA GATGGTTACA AGTTGCATTC ATGGTCAAAA 
    TTGTGTCTGA ACATAGAGAT TCTTTGGAGT TCATAGACGA AGTGATTTGT 
    TTTGTTCAAT ACTTCCACAC TTATAATGGG TGCTGTCTGC TCAAGGAAGA 
    GAAGCCAATT AGTGCACGAG GATGACTCTT TCCAGACATC TTCCAGGTTC 
    TCAAAGACCA GCAGCTTGAA ATGGCTGCTG CTTACACTGC CACGCAGCAA 
    TTCCGATGTC TCCCGCAAGG GCCAGGGAAA GGGCCCTGGT CGTTGCCCAT 
    CTCTAATGGA GCTTTGTGTG GCCAAAGCCT GCGAGGATAT TAACAAGTAT 
    TCTAGTTTTT CTGTATTGCC GAGGGATCTC AGCCAGCAGA TTTTTAATGA 
    ATTGGTAGCG TCGAACCGTC TCACGGAGAC ATTGCTTGAA ACTTTTCGGG 
    ATTGTGCACT ACAGGACATT GATTTGGGGG AGTATCCTGG AGTGAATGAT 
    GCTTGGATGG AAGTAGTGGC TTCTCAAAGG CATTCATTGT TATCAGTTGA 
    CATTTCTTGC TCTGAAATAA CTGATAGTGG GTTATATCTT CTTAGAGATT 
    GTCCAAACAT GCAAAGCTTG GCATGTAATT ACTGTGATAT GATCTCAGAG 
    CATGGCCTAG GAATCTTGTC AGGTCTTTCA AACCTGACAT CTCTCAGTTT 
    CAAGAGCAGC GATGGTATTA CTGCTGAAGC AATGGAAGCA TTTGCTAATT 
    TAGTTAATTT GGTAAATCTT GATCTCGAAC GATGCCTAAA GATTCATGGT 
    GGCCTTGTTC ACTTAAAAGG CCTCAGGAAT CTGGAGTCAC TCAATATGAG 
    ATATTGTAAC AACATTGCAG ATTCAGATAT CAAATACTTA TCAGATCTCA 
    CAAATTTGAA AGAATTGCAA TTGGCTTGTT GTAGAATCAC TGATCTGGGT 
    GTTTCTTATC TTAGAGGCTT GTCCAAGCTA ACACAGTTGA ATTTGGAGGG 
    CTGTCCAGTG ACTGCTGCCT GTTTGGAAGC TATATCAGGA TTGGCTTCTC 
    TGGTGGTGTT GAATTTGAGT CGGTGTGGCA TATACGGTGA AGGCTGTGAA 
    AACTTTCAAG GTCTTAAAAA ATTGAAGGTT TTAAACTTGG GGTTCAATAA 
    TATCACAGAT GATTGTTTAG CACATCTGAA AGAGTTGATC AATTTGGAAT 
    CTCTAAACTT GGACTCATGC AAGGTTGGAG ATGAAGGCTT ATTACATCTG 
    AGAGGCCTTA TGCTTTTGAA AAGTTTGGAG CTATCTGACA CCG

    Gene models with high sequence identity

    1. AT1G15740.1 [+] show detail - Leucine-rich repeat family protein
      E-value: 6e-119; Score: 424.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther F-BOX/LRR PROTEIN-RELATED 2 1.5e-105
    HMMPanther F-BOX/LEUCINE RICH REPEAT PROTEIN 1.5e-105
    superfamily RNI-like 5.2e-43
    HMMPfam Leucine-rich repeat 0.76
    Gene3D no description 2e-25
    HMMSmart Leucine-rich repeat, cysteine-containing subtype 650
    HMMSmart Leucine-rich repeat, cysteine-containing subtype 19
    HMMSmart Leucine-rich repeat, cysteine-containing subtype 4
    HMMSmart Leucine-rich repeat, cysteine-containing subtype 73
    HMMSmart Leucine-rich repeat, cysteine-containing subtype 72

    See the detailed result >

    AT1G15740.1

    Model type
    Protein coding
    Short Description
    Leucine-rich repeat family protein
    Computational Description
    Leucine-rich repeat family protein; BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT4G23840.1); Has 38052 Blast hits to 19856 proteins in 856 species: Archae - 6; Bacteria - 8624; Metazoa - 11681; Fungi - 680; Plants - 12072; Viruses - 79; Other Eukaryotes - 4910 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR