K36517

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36517

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36517

Determination of introduced cDNA(s)

  • J013139E23 - Rice Full-length cDNAs - Original: J013139E23

    full reading [+] show sequence

    Nucleotide sequence: J013139E23 - full reading 
    GCGCATCTCC GCTCCTCGAC CGCGAGAGAG GAGAGGAGAG AGAGAGAGAG 
    AGAGAGAGAG AGAGAGAGGC GTTGCGAGAT TCATCAGGCA GGCGCAGGAG 
    AGGAGAGGAG AGGAGAGGAG ATTCATTATG GGGGTGGACT ACTACAAGCT 
    GCTGCAGGTG GAGCGGGGCG CCACCGAGGA GGAGCTGAAG AAGGCGTACC 
    GGAAGCTGGC CATGAAGTGG CACCCGGACA AGAACCCCAA CAGCAAGAAG 
    GAGGCCGAGG CCAAGTTCAA GCAGATCTCC GAGGCCTACG AGGTGCTAAG 
    TGATTCCCAG AAACGAGCAG TCTATGACCA GTACGGAGAA GAGGGGCTCA 
    AAGGGCAGGT GCCACCTCCT GGAGCAGGTG GGCCTGGTGG GTCTTCATAC 
    TATGGGGGTG ATGGGTCGAC GTTCCGGTTC AACCCTCGAA GCGCGGATGA 
    TATATTTGCT GAGTTCTTCG GATTTTCCAG CCCATTCTCA AGCATGGGTG 
    GCATGGGTGG TATGGGTGGA GGTGTTGACA GGGGCATGCG GGGATCAAAG 
    TTTGGGATGT ATGACAATGA TATATTTGGG TCCTTCTCTC AGTTCCCTGG 
    TGAGGCATCA ATGCATGCTC CCCAACGGCC CCAGAAGGCT GCACCAATTG 
    AGAACCGACT GCCTTGCAAT CTAGCTGACT TGTACAAAGG CACCACCAAG 
    AAGATGAAAA TTTCACGGGA AATATTAGAT TCTAGCGGGA GAACCATGGT 
    TGTTGAGGAG ATCCTAACAA TCGACATAAA ACCTGGATGG AAGAAAGGGA 
    CAAAAATTAC TTTTCCTGAA AAGGGTAACG AGTCTCCGCA TGTATTCCTG 
    CGGATATTGT ATTCGTGATT GATGAGAAAC CACATGATCT GTTTACACGA 
    GAGGGGAATG ATCTCGTCAT GACACAGAAG ATTTCCTTGG CTGAGGCCTT 
    GACAGGATGT ACAGTTCAGG TAACAGCACT AGATGGTCGG AACCTAACAG 
    TACCAATCAA TAATGTCGTC TACCCTGGCT ACGAGGAGGT TGTTCTCCGA 
    GAGGGCATGC CAATTCCGAA GGATCCATCA AAGAAGGGAA ATCTTAGGAT 
    CAAGTTCAAC ATCAAATTCC CCTCAAGGCT GACGTCTGAG CAGAAATCAG 
    AAATTAAGAG GCTACTAGCT TCTTGAGGAA CACAATATAC CGTTAGGTTG 
    TCTGGTTTTT TGGGTGCACT GGGGAGACCA ATCAGATGTT AAGCTGGGAA 
    ATGTGAATAC CATCCAAAGA CTCATTTTTT GTGGGTTCTG GTTATTCCAC 
    CTTTGTAACT TAAAATTGTC AATTTTGGCA GAATAATTCA TCAAAATAGA 
    TAATTCTGTG TC

    Gene models with high sequence identity

    1. AT3G08910.1 [+] show detail - DNAJ heat shock family protein
      E-value: 2e-110; Score: 174.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Heat shock protein DnaJ, N-terminal 1.8e-32
    HMMPfam Chaperone DnaJ, C-terminal 7.4e-31
    HMMPfam Heat shock protein DnaJ, N-terminal 3.2e-29
    Coil coiled-coil 0
    FPrintScan Heat shock protein DnaJ 6.3e-09
    FPrintScan Heat shock protein DnaJ 6.3e-09
    HMMPanther HSP40-RELATED 3.6e-106
    HMMPanther Molecular chaperone, heat shock protein, Hsp40, DnaJ 3.6e-106
    HMMPanther HSP40-RELATED 1.3e-57
    HMMPanther Molecular chaperone, heat shock protein, Hsp40, DnaJ 1.3e-57
    PatternScan Heat shock protein DnaJ, conserved site 0
    ProfileScan Heat shock protein DnaJ, N-terminal 24.937
    Gene3D no description 1.1e-25
    Gene3D Heat shock protein DnaJ, N-terminal 2.5e-28
    Gene3D no description 5.3e-17
    superfamily HSP40/DnaJ peptide-binding 6.2e-23
    superfamily Heat shock protein DnaJ, N-terminal 5.5e-33
    superfamily HSP40/DnaJ peptide-binding 1.2e-09

    See the detailed result >

    AT3G08910.1

    Model type
    Protein coding
    Short Description
    DNAJ heat shock family protein
    Computational Description
    DNAJ heat shock family protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock family protein (TAIR:AT5G01390.1); Has 28100 Blast hits to 27785 proteins in 3479 species: Archae - 185; Bacteria - 10426; Metazoa - 4606; Fungi - 2650; Plants - 2881; Viruses - 19; Other Eukaryotes - 7333 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR