K36522

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36522

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
whole plant (PO:0000003)
  • increased height (PATO:0000570)
    (Adult plant::Plant height::tall)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36522

Determination of introduced cDNA(s)

  • J013155I02 - Rice Full-length cDNAs - Original: J013155I02

    full reading [+] show sequence

    Nucleotide sequence: J013155I02 - full reading 
    GAGTTTGGTC CAATCCAACC AAGCAGAGGC TGCAGCCTGC GGAGAAGAGG 
    AGAAAGAAAC AGAGTTTCAG TTTCCGACAT GCCGCGGCTG CTGCCTGGAA 
    CTGGAAGGGC CTCCTCCTTG TCCTCTTCTT TGCTACTGCT CCTGCTGCTC 
    GGTGCCGCGA TGGCGGCGGC GCCGGAGGCG GCGGCGGTGA TGCCCATGGA 
    GGCCTACTTC TCGCCGGCGG AGCTCGTTCG CATTGCGGGG TACGGCGAAG 
    AGCTGGTGTC GACGGTGATC GTGTCCGGGA AGGTCGTCTG CAAGCTCTCC 
    CTCCGCCCAC CCGGCTCCGA CCTCCTCAGC ATCGAGCTGC CAGGAGCTAC 
    AGTAGGAGTG GCCTGTGAAA CTGGAGGTAT AAAGACGATG GCTAACTCTG 
    TATTCACAGT AACTGATGAG AATGGCAACT TCACCATAGA ACTCCCTTCT 
    CGGCTCCATG CCACACCAAA CCTGGAGAAG GCTTGCTCTG TCAAGGTGCT 
    CCAGCTCCCG CTAGACTGTG CGTGTTGGCC TCGCCGTAGT CCTAGTTACT 
    ACCATGGCAT CCAGTTATCA TCATCAGAGG ATGGCATCCG CTCCTACACG 
    ACAGGGGTGA TACGGCTGCA GCATCATGAT ACAAAGTCAG ACATGTCCAT 
    GCACCATGTT GGTACAGAAT AGAATTGATG ATAGACAAAC AATTGTTGAT 
    GTAAAGTAGT TCGATTCTTG GTTGAGTTCC ATTTTCTTTA AATTTTCAAG 
    AAGCGTAGTT GGGTAGATCG AATAGATGCC TTTTTCCATA TATTTTCTTC 
    CTATCCCTAC TTCATTTCTT GTAATTATGA CCTCCCTTTA TAATATACAA 
    CCAGATGTCT GGGCTCCGCC TCACCT

    Gene models with high sequence identity

    1. AT5G47635.1 [+] show detail - Pollen Ole e 1 allergen and extensin family protein
      E-value: 7e-25; Score: 111.00

     

    InterPro Scan Digest

    See the detailed result >

    AT5G47635.1

    Model type
    Protein coding
    Short Description
    Pollen Ole e 1 allergen and extensin family protein
    Computational Description
    Pollen Ole e 1 allergen and extensin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen/extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: Pollen Ole e 1 allergen and extensin family protein (TAIR:AT2G40113.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR