K36606

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36606

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36606

Determination of introduced cDNA(s)

  • J033031A06 - Rice Full-length cDNAs - Original: J033031A06

    full reading [+] show sequence

    Nucleotide sequence: J033031A06 - full reading 
    GATTTTCCCC TTCCTGCCTT GCCTCCTCGT CTCCTTCTCT GCTGCTCTCC 
    AAGCTCTTCC TGCTTCCATC AGGTTGTCTC GAGAAAGATT GGAGTTTTTG 
    GTGGTTTGGG TTGTGCGGTT CTTGCTTTTG TTGGCGCAAG CGCATGGCTG 
    GTTCTGGGAC ATAGTGAGCT GAGATAGAGT TCTTGTGTTC GGTGGAGTTT 
    GGCTTTGGTG AATCTTCGAT TCAAGTCTGG AGATGGCGCG TTTTCAGGAA 
    ACCAAGGCGA GGAATGATCA AGGACCTGTT GCTGATCATG TTGGGCACCG 
    AAACCTCATG GAAAACCTCA CAGATCCTCT GGATTCCAGT GGCATGGACA 
    TGATGGACGA AGCGCGAATT CCTAAGGCGC GGAAGCCATA CACGATAACG 
    AAGCAAAGGG AGAAATGGAC CGAGGACGAA CATAAGCTGT TCTTGGAAGC 
    CCTGCAGCTC CATGGCCGAG CCTGGCGACG CATCCAAGAG CACATAGGCA 
    CCAAGACTGC CGTGCAGATC AGGAGCCACG CACAGAAGTT CTTCTCCAAG 
    GTCATCAAAG AATCATCTGG GGACAATTGC AACAGCTTGG GTGCTGCATC 
    ATCAATTCAG ATTCCCCCGC CGCGGCCGAA GCGTAAGCCT GTTCATCCGT 
    ACCCACGCAA TCTAGGGAGC ACAGCCAGCA AGAACGTCCC TGCACTGAAA 
    CAGCTAGAGA AGCCTCAGCT GCAGGTGCAG TCTCTCTACG ACCAGGACAA 
    TGGGTCGCCG ACGTCAGTGT TAACAGTACC ACAGATACGG GCTGATACAC 
    TGGGAAGTGA GAGTGGTGGG TCGCCAACCT CGACGATTGA TATTGAAGAG 
    AGATGTCCTA CACCAAGCAT AGCAACTGCT GAGTTAGCTA TGGAGTTGCC 
    TCCTACAAAT GACGAGGAGG TCAAGGGCAA TGGCGATCAT GAAGAAGTTA 
    CATGTGACAG ATCAGGAGTT CCAGTCCTTA GGCTATTTGG CAAGAGGGTT 
    ATGGTGAATG ATTTACATCA GATGTCAGCC CCTGATGCCG GGAACCTGCA 
    AACTGTGGCA GACATGGAAG TGGACGCTTC AGCTGAGACA CCAACTAGTG 
    GAACTGGGAA ATTCTCTTCC CATGGTGCAG CAGAAGCAAA TACATGGAAC 
    CCATGGCTGA CTAACACACA GCAGTTTCTG TATTATCTTC CTAACGGACA 
    AATTTTCTCC GTGCATTCTG CTCTCCCATG CTTCACCTAC CATAATGAGG 
    GTGTTACTTG CACCCAGTTT TCAAACCCAC AGGTGGTAGC CTCAGATCAG 
    CAGCATCAAC ACCAAACTTC TGAAGCTGTA GATTACAAGG GTATACAGAG 
    GGAAGGATCT TGGACGGAGT CAAATACATC CTCAAGCAGT GTGCCTGAAA 
    CAGCAACTCA TAATTCAGAG ACTACAGAAT CATATAGAAA CGGAAACAGA 
    AACGAAGATG AAATGGTACC TTCTCCAGAT TCAAGAAAAT GTGTGAGCCC 
    AGGTTCCAAC TGCAGGCGAG GCTTTGTGCC GTACAAGAGA TGTGTTGCTG 
    ATAGTGAGGC GCTGCTGAAG TCACAGGCGC CTCAGGAGGA GGCAGACGGA 
    GAGATGACGA GGCTGTGCTT ATAAATTTTT GGAGCCTCGT AGATCACTGC 
    AACTATAGAT GCTTGCTACT AATATTTTGT TCACAGATGA GTAGGAACTG 
    ATGTACTGCA GGAGGGGCTG CTTTCCTGTT ACAAGAGGCA GATTGAAACC 
    GCGTTAGTAC TCCACAAAAC AGGGAGTGGC CGTGGTTCTT GTCTGGCCAT 
    GTACAGTTCA AATATTCTAT GTTTCCATTT TCCTCGTCGT GTGTTTGTAA 
    TTTCGCTCCC ATTGCGGGAG CGTTCAGAGG TCAATGGCTG TCATGCAATG 
    ACAAGTATTT TGATAGAGTT GTAGAAGGGT TGTACTGATG TAAATTATAC 
    AGTAACTTAT TATCTGTAAG ACAATAACAG GCGAGCTAAA GAAAACAACG 
    TTGGAAAGCT TTGTTC

    Gene models with high sequence identity

    1. AT5G17300.1 [+] show detail - Homeodomain-like superfamily protein
      E-value: 1e-29; Score: 128.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Homeodomain-like 2.8e-14
    HMMPanther SWI/SNF COMPLEX BAF SUBUNIT 2.1e-05
    HMMPanther SWI/SNF COMPLEX-RELATED 2.1e-05
    HMMSmart SANT, DNA-binding 3.8e-13
    HMMPfam Myb, DNA-binding 8e-14
    ProfileScan HTH transcriptional regulator, Myb-type, DNA-binding 20.318
    HMMTigr Myb-like DNA-binding domain, SHAQKYF class 2.2e-21

    See the detailed result >

    AT5G17300.1

    Model type
    Protein coding
    Short Description
    Homeodomain-like superfamily protein
    Curator Summary
    Myb-like transcription factor that regulates hypocotyl growth by regulating free auxin levels in a time-of-day specific manner.
    Computational Description
    REVEILLE 1 (RVE1); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT5G37260.1); Has 1557 Blast hits to 1521 proteins in 166 species: Archae - 0; Bacteria - 3; Metazoa - 201; Fungi - 29; Plants - 1060; Viruses - 9; Other Eukaryotes - 255 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR