K36816

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36816

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36816

Determination of introduced cDNA(s)

  • J023068C09 - Rice Full-length cDNAs - Original: J023068C09

    full reading [+] show sequence

    Nucleotide sequence: J023068C09 - full reading 
    TGGCTACCGA TCTTGTTCTC TCGCCCCCTC CCGGCGCGTG ATTCCCGGAC 
    GCGACTCGAC TCGACATCCC AATTCCCAAT ACACCACCAC GACCCCCCTC 
    CGTCCTCATC TGTCCCGCGG CCTCGACCAC GCCGGGAGGA GCCGCAGCCA 
    GACCGGGAGA CGCTCGTACG CCTGCCTCGA CCGATCCAGC GCCGCCACGG 
    CGACCGTGGC CAAGGAGATC CGCCCCCTCG TCGGTCCGCC GCCAACGATC 
    TCCGATCGAG ACAAACCCTA GCCACGCCCA TTGCCTTCTC CCGTCGCCAT 
    GTCCGCCGCG CATCTCCTCC GCCACTCTCG CAAGTTGCGG AGTTTACACA 
    ATGCTCTAGA CTGTGAGCGT TCTGGCCTCG TGCGCTACTT CTCCACTGCT 
    TCTGGTTCGT TCCCCACCAA GGGAAATGGT GCTGAGAAAA GAATTGGAGG 
    TGCCAGATTT CCTCAGCGCA AGCAACCTGG AAAAGAGCTT GAGACCTCCA 
    AGTTGTCACT AGGACTTAAT GGAAGCTACA CTTGCAGGAG ATCACCTAAC 
    AACTTTATCC CAAATACTAT TACTGGTCTC AATGGTTCAT TGTCATGTGG 
    ACAGATAGCT TCAGCAAGAT CTTTCTCAAG CAGTGCAGAC CTGCCACCAC 
    ATCAGGAAAT AGGGATGCCA TCACTCTCTC CTACAATGAC CGAGGGGAAC 
    ATTGCAAGGT GGCTGAAGAA GGAAGGAGAT AAGGTCTCAC CTGGTGAAGT 
    TCTTTGTGAG GTGGAGACTG ATAAAGCCAC CGTAGAAATG GAGTGCATGG 
    AAGAGGGCTA TCTTGCTAAG ATCATTCATG GAGATGGTTC CAAAGAGATC 
    AAAGTTGGTG AGATTATTGC TGTAACCGTG GAAGAAGAGG GTGACATCAA 
    GAAGTTTAAG GATTATAAAC CTTCAACTTT GGCTGCACCT GTAGCCCCTT 
    CTGAACTGAA GGCTCAGTCT GAGCCTACAG AACCAAAGGT GGAGGAAAGA 
    GAGCCTTCCA AAGCATCTGA GCTAAAGGCC CCAAGGACTG AAGAACCTTC 
    GCGGTCAGGA GATCGAATAT TCTCCAGCCC TCTTGCTAGA AAATTGGCGG 
    AAGATAACAA TGTTCCACTG TCGAGTGTAA AGGGAACTGG TCCTGATGGG 
    CGCATTTTGA AGGCAGACAT TGAAGATTAC TTGGCTAAGG GTTGCAGAAA 
    GGAAGCTCTT GCGGCTCCAG GGCTAAGTTA CACCGATGTT CCCAATGCAC 
    AAATAAGAAA GGTTACTGCG AACCGCCTGC TAAGCTCTAA GCAAACAATT 
    CCACATTATT ACCTGACAGT TGACACACGT GTTGATAATC TCATCAAGTT 
    GCGAGGGGAA CTGAATCCAT TGCAGGAGTC CTCCGGTGGT AAGAAGATAT 
    CTATTAATGA TCTAGTTATA AAGGCTGCAG CTCTGGCTCT TCGAAAGGTC 
    CCTCAGTGTA ATAGCTCCTG GATGAATGAT TTTATCCGCC AATACCACAA 
    CGTGAACATC AATGTTGCTG TACAGACTGA GCATGGACTG TTTGTTCCAG 
    TAATCAGGGA TGCAGACAAG AAAGGACTTG GTATGATTGC GGAGGAGGTG 
    AAGCAGTTGG CTCAAAGAGC AAGGGATAAC AGTTTGAAAC CAGATGATTA 
    TGAGGGAGGC ACATTCACCA TATCAAACTT GGGAGGTCCT TTTGGAATTA 
    AGCAATTTTG TGCCATCATA AATCCTCCTC AGTCGGCAAT CTTGGCCATT 
    GGTTCTGCTG AGAGGAGGGT GATACCTGGC AGCGCCAATG GTCAATACGA 
    GTTTGGTTCC TTCATGTCGG CAACAATGAG CTGTGATCAC AGGGTTATTG 
    ATGGTGCAAT CGGGGCAGAA TTTCTGAAAG CATTCAAGGG CTATATCGAG 
    AATCCAACCT CAATGTTACT GTGAAGCTAA AGATCATCAA AACTATTCTT 
    CCCTTGTTCT CGAATGATGC ACAGAACGGT GCTGTCTCAT TTTGTATATT 
    TCCATCATGA TTTCGAGGAG GACCTGAAAA CCAAGAGCAC AGAGCCAAGG 
    GCAGGATGAC CTGGTTTTTG GATTAATTTT TCTTTTTCCT GTTTGTTTCG 
    TTCCAGTTAC ACTGGGAATT AGGATCAATT TACAAGCCTT CTTTAGCCCG 
    TTTTTATGGG TTTACTCCGC AAGTTCGTTG ACAGCAGAGT AAATTCCCGG 
    GAAACCATGC AGGATAGCCT TTATACGATT TGCCCCCTTT TTACTTTTTT 
    TTTCATCTTT GTGCAAAACC AAGAGGCGCA GAGGTAATAA GTTGCAAATC 
    TTGGGGAGTT TGGTTTATAC CCTTTCTCCG CAAAATTCTA ACGAGAAATT 
    CACAATTGTT CAGAGTAAAT GATGCATTGC TTAATCCATT TTGATGCT

    Gene models with high sequence identity

    1. AT3G13930.1 [+] show detail - Dihydrolipoamide acetyltransferase, long form protein
      E-value: 0; Score: 632.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT 7.4e-235
    HMMPanther DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE- 7.4e-235
    PatternScan 2-oxo acid dehydrogenase, lipoyl-binding site 0
    superfamily CoA-dependent acyltransferases 4.6e-81
    superfamily Single hybrid motif 1.4e-29
    superfamily E3 binding 1.5e-13
    HMMTigr Dihydrolipoamide acetyltransferase, long form 1.5e-204
    ProfileScan Biotin/lipoyl attachment 15.233
    Gene3D no description 3.8e-31
    Gene3D E3 binding 1.8e-07
    Gene3D no description 4.1e-75
    HMMPfam 2-oxoacid dehydrogenase acyltransferase, catalytic domain 5.6e-81
    HMMPfam Biotin/lipoyl attachment 2.4e-19
    HMMPfam E3 binding 2.7e-16

    See the detailed result >

    AT3G13930.1

    Model type
    Protein coding
    Short Description
    Dihydrolipoamide acetyltransferase, long form protein
    Computational Description
    Dihydrolipoamide acetyltransferase, long form protein; FUNCTIONS IN: dihydrolipoyllysine-residue acetyltransferase activity, copper ion binding; INVOLVED IN: pyruvate metabolic process, metabolic process; LOCATED IN: mitochondrion, chloroplast, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2-oxo acid dehydrogenase, lipoyl-binding site (InterPro:IPR003016), Dihydrolipoamide acetyltransferase, long form (InterPro:IPR006257), E3 binding (InterPro:IPR004167), 2-oxoacid dehydrogenase acyltransferase, catalytic domain (InterPro:IPR001078), Single hybrid motif (InterPro:IPR011053), Biotin/lipoyl attachment (InterPro:IPR000089); BEST Arabidopsis thaliana protein match is: Dihydrolipoamide acetyltransferase, long form protein (TAIR:AT1G54220.2); Has 21425 Blast hits to 19790 proteins in 2331 species: Archae - 106; Bacteria - 12026; Metazoa - 730; Fungi - 474; Plants - 369; Viruses - 0; Other Eukaryotes - 7720 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR