K36836

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36836

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36836

Determination of introduced cDNA(s)

  • J023050H06 - Rice Full-length cDNAs - Original: J023050H06

    full reading [+] show sequence

    Nucleotide sequence: J023050H06 - full reading 
    GGAGGGACCT TCGGTGTACC TTTTCCTTTC TCCTCCTCGA GAATCCCCAA 
    ATCTCGCTCG CTATTCACGC GACCACGCAA ACCGACCTTC CTCCGTCGCT 
    CGGCCAGCGG CCGGCGCCGG CGCGCGGGGT CCACCTGAGG CGGCCATCCC 
    CTTCCCAGGC TCTCAAGCCA GGAATCCGCT CGCCGTGCGA CTTAGGCGGA 
    GTTACGAGAG GGCGCTCCCT GCCGTCGCGA ACCACCATCG CCGGCGCGGG 
    CGGCGCCGAA GGGGGCCGCG GCCAAGACGG CGGCCGATCA GCTTGAGAGA 
    TTGTTGTCAT GGCAGCGAAA CAATCTGGTG ACTACTCGGC CGCGAAAGGT 
    GATGCGCATT GTTATCAACT CTTGGTCGAG GTTCATGCCC CATTACATCC 
    CTGATGATGT GATGTTCAAC ATCCTGTCAT GGCTGCCATC CAAGTCTCTC 
    ATCCGATTTA AGTCTGTGTG CAAGGCTTGG CATGCCATGA TATCCAGCCC 
    GTGTTTCACT GATGCTCACC TTGAGTGTTC CAAGAGAAAC CCATCGATAC 
    TCATGGTCCC TGGTGCTTAT GAGAAGCAGG AGGACGGTGA GAATATCGCC 
    TTCATGATGG TCCTCTATAA GTACCATGGA GGTAAAACAA TGGAACTGGT 
    CCATATGCAG AACTTTCCGC TAGGCATTGG TGTATGGACT CGCCCTGTGC 
    ACTGTAATGG TTTACTCCTC ATTCCCACCA TGAACCTCGA AATGATGATC 
    TGTAACCCTT CAACAAGACA GATTGTTTTC CTACCAAAAG TCAGTGGCAA 
    CATTTGCACA GGCACAAGGG CTGGATTTGG GTTTGATCCT CACAGCAACA 
    AATACAAGGT GGCTAGATCT TTCTATCAAA GGGATAGTGA AACACAAGAA 
    TTAGTCTGCA AGTTTGAAGT GCTTACTCTG GGCACTAATG CATGGAGGCA 
    AACTGAAGAT CCACCATATC CAATTGATGC TTTAACTCCA GTCCATGTGA 
    AAGGCGCCAT CTACTGGATA GTGTGTAGTT CACTTTGCCC AGATCCACCT 
    AATGCATTCC TCCGATTCTG TTTGACTGAT GAGAAGTTCA GTTTGTTTCC 
    GTGTCCTCCA TCCAATGTAA AGTCTGTCCG TTTCACAGAG GTGGAGGGTG 
    AACTGTGTTG TGCTTGCTTT TTCAGTGAGA CGCTAGCGCT GGAGATTTGG 
    AACTGCAGTG GTGGGCAGAA CCTTGAATGG ACTCGACGCT ATGTTATACA 
    GATTCCACCT GATGTTGTTA TGAAGTACCC TGTAGAAAGA CCCCCTTTAA 
    TTGTTTTTCG TGAAAAAATG TTGCTGCTGG CATTCAAAAA GGTCTACAGG 
    TATGATATCG AAACCTGTAG AATAGTAGAA TTAGCTTCAA AGGTTTCAGA 
    CTTCACCTGC TATGAACCAT ATTTGGAGAA GGAAGCAAGG GATTTGCATC 
    TATTTAATTA TGCTGAGAGT CTAGTTCCAA TTAGAGAATT TTGAGAAGTT 
    ACTTCTGTCT GTTAGTGTGA GCTTCTCCAC AACTTGTAAT GATCCAAGGT 
    AGGGAGAAGT TTGTTTTTTT TGGTTGCAAG TGTCAGCCAA GGTTCATTTT 
    CATTGAATTC ATCTGTGCTA CTATTTTACT GTAACAATCA ATTTTTCTTT 
    CTAGCGGTAT TGACCATGAA ACGCAATAAG TATCATGTGA ATTGTCCTCA 
    GTTATGTTGC TCAGAATAAC TCCTATGCAT TTTGCCACTT ACATATGTGA 
    TATGTTCTTT TCTTGTTTTA ATTAACATTT TATATTAGCA AATATATTCT 
    TACTAATGCC ATATTTTCAT TGTTGTTTAT TAATATGTTC TATCATCTGA 
    GGAGATCATC AAAAAATAAT CTGGTCCATC TGAAACTAGT ACTCCCAACA 
    GAGCTAGTGC TTTTTAAGAG GGAGAAGAAA GCGGGCTACA GATATGTGAT 
    TCAGCGCTGC AAGTGAATGA TCCCAATCTT TGCTCTTGCA CCATTGCTCA 
    AACTTGTGCC ATGTTTTTTT TATCAAGGAG TTTCAATCGG TCAGTCACTT 
    GTGATTCTTT TTACAGATTA CATTTGTTGC ACTTGCTGAA GATTAAGGTA 
    TCTGTTGTTG CTTGCTGGTT CTCGTGCTAT TGTTCTCTAC TGTTTTTGCT 
    GAATTCTTCA GCTGGTGCTG CTGTTGATGT GCTGTTGTCG AGGCCACGAT 
    CAGGAGTTCG TGACCGTGAT TTCGCAGAGG GAGAGACGGA AATAAAATTC 
    AGTTGGTGGT TTCGTAGAGG GCCCACTTTT AATTTTAGAA AGTCAATTTT 
    AGACAATCTC CTGGAGGGAT CAATATTTTA GCACATCAAA TTTTGTTTAG 
    CATTCCCATA AAAATAGTTT TGGGAATGAA ATATTGGGAT ACTCTTGGTG 
    ATCTTGGTGA TGCTCTAATT CCCACGGCAG CCAGCCTAAA CGTCGCCGTG 
    CAGTGTGCGG ACGCGGCCTG TGCCACCTCC GTACCATGCG TATCCAATTC 
    TCGGTTTATT CGGGAAAACC GAACAAGAAA GCTGAACACT TTCATATACT 
    ATGGATGTGT TTAGTTCTTT GGTGTAAAGT TTTTGAAGTA TACGGACACA 
    TATTTTTGGG TGT

    Gene models with high sequence identity

    1. AT3G52320.1 [+] show detail - F-box and associated interaction domains-containing protein
      E-value: 2e-15; Score: 82.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr F-box associated interaction domain 1.59999889349252e-14
    HMMPfam F-box associated domain, type 1 0.0016
    ProfileScan F-box domain, cyclin-like 0
    HMMPfam F-box domain, cyclin-like 3.1e-05
    superfamily F-box domain, Skp2-like 1.20000117458134e-12
    HMMSmart F-box domain, cyclin-like 3.1999989904635e-10

    See the detailed result >

    AT3G52320.1

    Model type
    Protein coding
    Short Description
    F-box and associated interaction domains-containing protein
    Computational Description
    F-box and associated interaction domains-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 3 (InterPro:IPR013187), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box associated ubiquitination effector family protein (TAIR:AT3G52330.1); Has 2113 Blast hits to 2071 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2111; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR