K36926

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36926

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36926

Determination of introduced cDNA(s)

  • J013116N21 - Rice Full-length cDNAs - Original: J013116N21

    full reading [+] show sequence

    Nucleotide sequence: J013116N21 - full reading 
    GACCCACAGA GCAACATCGC CGCCGCCACC GCCAGCCGCA ACAGCACCGA 
    CGACGAGGAG GAGCTGAGAA TACGAGGCGA TGCCGAAATC CAAGCGCAAC 
    CGCCCTGTAA CCTTATCCAA GACCAAGAAG AAGCCTGGAT TAGAGCGCAA 
    GGGCAAAGTG GTTACCGATA TCAAAGATGC CGTCGAGCAC TACGCTAATG 
    CCTATGTCTT CACCTACGAT AACATGAGGA ATCAGAAGCT CAAGGACCTC 
    AGAGAGCAGC TCAAGTCCTC CAGCAGGATA TTCCTTGCTG GAAAGAAGGT 
    CATGCAGATA GCGCTGGGGC GTTCATCTGC TGATGAAGCT AAAACAGGCC 
    TTCATAAACT TTCCAAGTTC CTACAAGGTG ATACTGGACT GTTCTTTACT 
    AATCTTCCAA GAGATGATGT AGAGAGATTA TTTCGAGAAT TCGAAGAGCA 
    TGATTTCGCC AGGACAGGAA GTATTGTGAC AGAAACGGTG GAGCTTAAGG 
    AAGGCCCCTT GGAACAGTTT ACACATGAAA TGGAACCCTT TCTACGCAAG 
    CAAGGACTGC CAGTTCGTCT GAACAAAGGG GCGGTGGAAT TAGTTGCAGA 
    TCACATAGTA TGTGAAGAAG GGAAGCCCAT TTCACCAGAA GCAGCACAAA 
    CTCTGCGGTT GCTTGGGATG CAGATGGCAA CATTCCGACT GTACCTTGTC 
    TGCCGGTGGT CCTCTGATGA CTTTGAAGTT TACAAGGAAG GCTTGGCGCA 
    ACTGCGAGCT GAAGCTGATG ATTCTTCTTA AGCTTGTTTG GCTTGCACAC 
    CCAGTTTGCA GTGACGCACT TGCTGTCTTG TTGTGCTGAG GCAGTTTTTG 
    GTATTGTGCG TGCGCATGGC GTTTGTGCTC TTGGTACGTT GGAAATCTGA 
    AAAATGTAAT ATGTTAACAG GGTGTTCGTT GTCCTAGTAT TTTCTATAAA 
    GCTATTCGTG TCTTATTAAC AGGGTGGCAC ATCTACGCAG CTAACATGCT 
    TCATTTGTTG GTATTTAAAC TCTTCTGAAC AATTGTTACT CCCTGAATGA 
    ATTCGTTGGT AGCTATAATT TGATTTCTCG CC

    Gene models with high sequence identity

    1. AT1G25260.1 [+] show detail - Ribosomal protein L10 family protein
      E-value: 2e-79; Score: 292.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Ribosomal protein L10 1.4e-19
    HMMPanther MRNA TURNOVER PROTEIN 4 MRT4 1.4e-80
    HMMPanther 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1.4e-80

    See the detailed result >

    AT1G25260.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein L10 family protein
    Computational Description
    Ribosomal protein L10 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic ribosome, ribosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L10 (InterPro:IPR001790); BEST Arabidopsis thaliana protein match is: Ribosomal protein L10 family protein (TAIR:AT3G11250.1); Has 1099 Blast hits to 1097 proteins in 339 species: Archae - 116; Bacteria - 0; Metazoa - 360; Fungi - 259; Plants - 172; Viruses - 0; Other Eukaryotes - 192 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR