K36932

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36932

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36932

Determination of introduced cDNA(s)

  • J023111J08 - Rice Full-length cDNAs - Original: J023111J08

    full reading [+] show sequence

    Nucleotide sequence: J023111J08 - full reading
    GATTGCTCTC ATTGCATTGT CTCCTCTTCC TACTGCTGCT GCTGCTTTCT 
    CTCTCTAGGC TGCTTGCTTT GCTTGCCCCT CTCTCTCTCT CTATCTACAA
    ATGTTCTCTT CTTTTGAGAG AAGAGAGGAA TAGCTGCAAC ACAAAGGAAG
    GCACTGCTTG CACTGTGCAG TGTGCAGGCA CAGCCAAGTT TTCAAAAGAA
    CCCGCCATCT TCTTTCTCTC TCTACTGTCC TAGCAATTCT CTCTCTAGCT
    CCAGTATTAA TTTCTTTCCA TCCTCCATTT TCTTGGGCAC CGTGCGAGCT
    TAGCTCTGCA CTGTTTGCCT CAGTTGGGTT GGTTTGGTTT GGTTGCTTCT
    TCTCTGCTTC AACGGTTGGT CGACTTCAAT GCAAGAAAGC ATCGGCAGCA
    ATTGCTCCTC CCGTTGAGTT TTTCGTCGTC GTTTGAAAGC GAAGGAGACG
    GCGACGGCGA CGAGGAGGAG GAGGAGGGAT TAATGTCGTC CATGGCCTCC
    AACGAAGAGG TCGGTAATGA AGATGGGAGG CAGGAGGATC TGCTTGTTAA
    GGAAGGGCCA GGGGAGCACC AAGAAAACAC CATCAGAGAT TCCGACGAAG
    CGAAAAATGA GGATTGCAGC AATAGCGGGT CAGTAACCGA AGCCGTCGTA
    TCAAGCGAAG AACCCAGTGA CAGGAGCAGC ACTGAAGAAC CCAGTGACAG
    GAGCAGTACT GAAGAACCCA GTGACAGTAG TAGTGGTGGT GACAGTAGCA
    GCCAATCTGC TGATTCTGAT GGAGGTAGCA AAGAGGCGCC TAAGATGGAT
    TCGAAGGCCG GTAACGATGA CAGCAGCGAG TGCACCGATC AGAGCTCTCC
    TCGCGCGGTG CTAGACATCT CGGTATCCGG TAGTGTCGAC TCCGATGAGA
    GCTCCTCCGT TGAGCAGCCA GCGGAGTCGA ATCACAATAC GCAGTGGAGG
    AACCTGATCA GTGGATTGAT ACTCAGGAGG AGGAAGTCGA TGGCGAGAGC
    GGGGACATTC CCTCAGAGAA CCAAGACCAC AGGGCTTAAG AGGTACCTGG
    AGAGGATGCG GAGCGGCAAG AACCAGATCG ATTGCGGCGC CATTGCTCCT
    GAGATCCTTC CTGAGATCAG CAAGTGGAGG CCATCATGGA GAAGCTTCGA
    CTACAGTGAG CTTTGTGCTG CAACTGACAA ATTCAGTTCA GAAAATTTGA
    TCGGAAAAGG CGGGCATGCT GAGGTGTACA AAGGACATCT TGCTGATGGA
    CAATTTGTAG CAGTGAAGAG ACTAACAAAA GGTGGTAACA AAGAGGACAG
    GATTAGCGAT TTCTTATCTG AGCTTGGAAT AATAGCTCAT GTTAACCATC
    CAAATGCGGC ACAGCTCTTG GGGTTCAGTG TGGAAGGGGG CTTGCACTTG
    GTTCTTCAGT TCTCACCTCA TGGAAGCCTG GCTTCTGTTC TTCATGCTGA
    ACAGGCACAA AGGGAGCCCT CAAGTGGAAG GCTAGGTTCA ATATTGCTCT
    TGGAATTGCT GAAGGACTGC TTTATCTACA TGAAGGCTGC CATCGACGCA
    TAATTCACAG AGACATCAAA GCATCAAATA TCCTTCTAAC TGAAGATTAC
    CAACCTCAGA TCTCAGATTT TGGACTTGCA AAGTGGCTTC CTGACAAATG
    GACTCATCAT GTTGTGTTCC CCATTGAAGG G

    Gene models with high sequence identity

    1. AT5G18910.1 [+] show detail - Protein kinase superfamily protein
      E-value: 3e-62; Score: 118.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SERINE/THREONINE PROTEIN KINASE-RELATED 1.1e-55
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 1.1e-55
    HMMPanther SERINE/THREONINE PROTEIN KINASE-RELATED 7.9e-47
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 7.9e-47
    superfamily Protein kinase-like domain 3.9e-21
    superfamily Protein kinase-like domain 1.5e-22
    Gene3D no description 1.6e-19
    Gene3D no description 8.5e-16
    PatternScan Serine/threonine-protein kinase, active site 0
    PatternScan Protein kinase, ATP binding site 0
    HMMPfam Serine/threonine-protein kinase-like domain 1.6e-16
    HMMPfam Serine-threonine/tyrosine-protein kinase 7.3e-12
    ProfileScan Protein kinase, catalytic domain 16.301
    ProfileScan Protein kinase, catalytic domain 12.627

    See the detailed result >

    AT5G18910.1

    Model type
    Protein coding
    Short Description
    Protein kinase superfamily protein
    Computational Description
    Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: peroxisome; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ROP binding protein kinases 2 (TAIR:AT3G05140.1); Has 112793 Blast hits to 111645 proteins in 4265 species: Archae - 108; Bacteria - 12991; Metazoa - 42065; Fungi - 9590; Plants - 31347; Viruses - 418; Other Eukaryotes - 16274 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR