K37026

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased width (PATO:0000599) (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37026

Determination of introduced cDNA(s)

J023077K12 - Rice Full-length cDNAs - Original: J023077K12

full reading [+] show sequence

GAGTGAATCA ACACGAAACC CTGCGTCCAC CGTGACGCTT TCCTGCATAC 
ACCTGAGTTT TATATGGTAT CAGAGCCTCA AAGTCCGGCG TGATGGCAGG 
TTCCTCGTCA AGCACTGCCT CCACCAATCC TCTCTTTGGC GTTCAAGTTT 
CAGAGAAACT GACCAAAGGA AACTATGCGC TCTGGTCGGC GCAAGTCCTG 
GCCGCGATAC GCGGCGCCCG TCTTGATGGC CACATCACCG GCGCCACCGC 
CGCTCCATCC ATGGAGATCG AGAAGACGGC GAGCGACAAG ACGACGGAGA 
AGATCGTCAA CCCCGCCTAC CAGGAGTGGT TTGCCTCGGA CCAACAGGTC 
CTAGGCTTCC TTCTCTCCAC GCTGTCAAGA GACATTCTCA CCCAAGTGGC 
GACGGCATCC ACGGCGGCGC AGGCATGGCA GCAGGTGTGC GCCATGTTCA 
CTGCTCAAAC CAAAGCCCGG TCGCTCAACG TCCGGCTTAC TCTCACCAAT 
ACCCAGAAAG GTAACATGAG TATATCTGAG TATTGTGGCA AGATGAAAGC 
ACTAGCAGAT GAAATCGCTA GTTCAGGGAA ACCCCTTGAT GAGGAAGATT 
TAGTCGCTTA TGTTCTGAAT GGGCTAGATG ATGATTTTGA ACCTGTTGTA 
TCTGCTATTG TGGCACGCAA TGAGTCGACC ACAATGGCGG AAGTGTACTC 
TCAGCTTCTT AACTTTGAGA ACAGGCAAGC TCTTCGGCAA GCTCATGCTT 
CGGCGAACGC GGCCGTGGTG GTTTTCAGCG TGGTCGCAGC GGCGGCCGTG 
GCACACGTGG GCGCAGCAAT CCTGCTGCTC CAGGACGTGG GCGCGGCACT 
GGAGGAAATC AGACTCGGGG TGGTAATGAC CGCCCCATCT GCCAAGTGTG 
CCTGAAGAGG GGGCACATCG CTGCAGAGTG TTGGCATAGG TACGATGAGA 
CCTATGTCCC TGATGAAAGG AGTGCGGCTG CAGCAGCTGC ATATGGCATC 
GACACCAATT GGTACCTCGA CACAGGGGCA ACCGACCACA TCACCAACGA 
ACTCGACAAG TTAGATGTTC GGGAGAAGTA CAAGGGAGGA GACAAGATTC 
ACACCGCAAG CGGTGCAGGT ATGGAAATTA AGCACATTGG TGATTCTGTC 
ATTCATACCC CTACTCGTGA ATTACATCTC AAAAATATTT TACATGTTCC 
TCAAGCGAAA AAGAACCTTA TCTCTGCTCA TCGTTTAGCT ATGGATAATT 
TTGCTTTCCT TGAGGTTCAT TCCAATTATT TTTTGATAAA GGATCGAGCC 
ACGAGGAACA CGATTCTTAA GGGGAGATGC CGCCGTCGCC TCTACTCCCT 
TCCTACATCA CCTGCCAAGC AAGTCCATGC CGCCACAACT CCTTCCTTCT 
CCCGATGGCA TAGTCGTTTG GGACACCCAG CCGTGCCCAT AGTCACTAGA 
GTTCTTAGCA AGAATAATTT ACCTTGTTCT ACCGTAGCAA ATAAAGACTC 
AATTTGTGAT GCCTGTCAAA AGGGCAAGAG TCATCAGCTT CCCTATCCTA 
AGTCTTCAAG TGTGTCAAGT CAACCTCTAG AACTTATTTT TTCTAATGTC 
TGGGGCCCTG CTCCTATTTC TGTTGGTGGA AAGAAGTTTT ATGTCAGTTT 
TATTGATGAT TATAGTAAAT TTACTTGGGT TTACCTTCTT AAGCATAAGT 
CGGAAGTATT CCAAAAGTTT CAGGAGTTTC AAACTCTTGT TGAGAGATTT 
TTTGGTCACA AAATTCTTGC TGTTCAAACA GATTGGGGGG GAGAGTATCA 
AAAACTCAAC ACCTTCTTTG CTAAGATAGG TATCTCTCAT CATGTTTCCT 
GTCCTTATGC TCACCAACAG AACGGTTCAG CTGAACGAAA ACATAGACAT 
CTCATTGAGG TTGCACTCAC ATTACTAGCA CATGCATCTA TGCCAATTAA 
ATTTTGGGAC GAAGCCGTTC TTGCTGCGGC ATACCTTATT AACCGCACTC 
CTAGCAAGGT TATCAACTTT GCATGTCCTT TAGAACAATT GTTCAAGGAA 
AAACCAAACT ATACAGCATT GAGAATATTC GGGTGTGCTG TTTGGCCCAA 
CCTTCGGCCT TACAATAAAC ACAAATTAGC TTTCCGTTCC AAGAGATGTG 
TTTTTCTAGG CTATAGTAAC CTACATAAAG GGTTCAAGTG TCTAGAAATT 
GCCACAGGCA GAGTCTATGT CTCCAGGGAT GTAACCTTTG ATGAAAGCAT 
TTTTCCTTTC TCCGAACTCC ACTCAAATGC CGGCGCACGC CTTAGAGCGG 
AAATATCTCT CCTTCCACCA TCCTTGGTTC CGCATCTTTC TTCATTAGGG 
GGAGAACAGA ATAACCATGT GCTTAATTAT CCGCCTAATG TTACTGATCA 
GTTTGGTGAA GAAAATGCAG AAATCGGTGA AGAAATTGTA GCAAACGGTG 
AAGAAAATGC AGCAGCAGCA GCAGATGAAA ATGCAGCAGC AGCAGCAAAT 
GGTGGTGCAC AGGACGACGT GCATGGTGTG GCATATGATG CGTCGCCGGA 
GCACTCTTCG CCTGTGACAG ATGATGCGAT GGCGTCGGCA GCTGAGCAGC 
ATGGCAATCC AATCCAGGAG GAGCACCTGG TGCAGGCGTC CCCACAAACA 
GCGTCGTCCA CATCGCCATC TGTTGCATCA TCGGCTGGCG TGCATGATGA 
TGTGACTACT GATCAGTCTG ATCAAACTGA TCAGGCCATG CCAGAAGCAG 
CTGTTGCACC GATCAGACCA AAAACACGTC TCCAAAGCGG GATCAGGAAA 
GAAAAGGTAT ATACTGATGG AACTGTTAAA TGGCTAAATT TTACTTCTTC 
TGGTGAACCA CAGAGTCTGG AAGAAGCAGT GAATAATAAA CACTGGAAGG 
AGGCCATGGA TGCTGAATAC ATGGCACTGA TAGAAAACAA GACATGGCAT 
TTGGTTCCTC CTCAGAAAGG AAGAAATGTC ATAGATTGTA AATGGGTGTA 
TAAGGTCAAA AGGAAAGCAG ATGGCAGTCT AGACAGGTAT AAAGCACGGT 
TGGTTGCAAA AGGATTCAAG CAAAGGTATG GCATTGATTA TGAAGATACT 
TTTAGTCCGG TTGTTAAAGC TGCTACTATC AGAATAGTTT TGTCTCTTGC 
TGTCTCTAGA GGTTGGAGTC TTAGACAATT GGATGTTAAA AATGCCTTCC 
TACATGGAGT CCTAGAAGAA GAGGTCTATA TGAAGCAACC ACCAGGGTAT 
G

Gene models with high sequence identity

AT4G23160.1 [+] show detail - cysteine-rich RLK (RECEPTOR-like protein kinase) 8
E-value: 4e-31; Score: 134.00

InterPro Scan Digest

Program	Description	E-value
superfamily	Polynucleotidyl transferase, ribonuclease H fold	9e-36
superfamily	DNA/RNA polymerases	3.8e-12
Gene3D	no description	6.5e-20
HMMPfam	Reverse transcriptase, RNA-dependent DNA polymerase	1.3e-48
HMMPfam	Integrase, catalytic core	5.7e-26
HMMPfam	Retrotransposon gag protein	2.6e-06
HMMPanther	GAG-POL-RELATED RETROTRANSPOSON	9.1e-254
ProfileScan	Integrase, catalytic core	20.716

See the detailed result >

AT4G23160.1

Model type: Protein coding
Short Description: cysteine-rich RLK (RECEPTOR-like protein kinase) 8
Curator Summary: Encodes a cysteine-rich receptor-like protein kinase.
Computational Description: cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (CRK8); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Reverse transcriptase, RNA-dependent DNA polymerase (InterPro:IPR013103), Serine/threonine-protein kinase domain (InterPro:IPR002290), Protein of unknown function DUF26 (InterPro:IPR002902), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (TAIR:AT4G23140.1); Has 131284 Blast hits to 128961 proteins in 4748 species: Archae - 114; Bacteria - 13787; Metazoa - 45525; Fungi - 11866; Plants - 40839; Viruses - 427; Other Eukaryotes - 18726 (source: NCBI BLink).
Link: InterPro Scan - TAIR