K37051

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K37051

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37051

Determination of introduced cDNA(s)

  • J013077F20 - Rice Full-length cDNAs - Original: J013077F20

    full reading [+] show sequence

    Nucleotide sequence: J013077F20 - full reading 
    TAGGCCCAAC GGCGGCTTCC TGTACGTGCG CGCGGCGAGG CGGACGGTGG 
    ACTTCTACCG GCGGTGGCGC GACGCGCGGC GGCGCTTCCC GCCGGGGACC 
    AACGAGCAGC ACGTCCTGGA GCGGGCGCAG GCGGAGCTCA GCCGCCGCGC 
    CGACGTCCGG ATGCAGTTCC TCGACACGGC GCACTGCGGC GGCTTCTGCC 
    AGCTCAGCCG CGACATGGCC AGGGTCTGCA CGCTCCACGC CAACTGCTGC 
    ACCGGCCTCG CCAACAAGGT GCACGACCTC GCCGCCGTCC TCCGCGACTG 
    GAGGAACTAC ACGGCGGCAC CGCCGGCGGC GAGGCGCCGG GGAGGCTTCG 
    GATGGACCAC GCCGGGCAAG TGCATCCGCT GACACCTCCA GCAGCTGCTT 
    GCTACTAGCT TAATTTTAAG CTTTTAGCCT AGCTAGCTAG CTGCTGCTAC 
    CACTGTTTAT TACTACCTCC GTTTCAGATT ATAAAATTTT ATAGCATTGT 
    TCATATTTAT ATAGATGTTA ATGAATCTAT GCACATATAT CTAGATTCAT 
    TAATATCTAT ATAAATGTAG ACAATGCTAG AAAGTTTTAT GATATAAAAC 
    AGATAAAGTA GTTATTACTG TGATTGTTTT ACGTACTGGT CAAGAGTAGT 
    CAGTGCGTGT GTACATTTTC TTGTTTCCCT CTTGTTGGGA TCTAAGTGGG 
    ACTGATTGAT ATCAGGAGCA TTGTAAAAGT GTTCTTTTTA TCATAACATA 
    TAATACAAAT TC

    Gene models with high sequence identity

    1. AT2G02061.1 [+] show detail - Nucleotide-diphospho-sugar transferase family protein
      E-value: 7e-23; Score: 104.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Nucleotid_trans 2.80000000000001e-18
    HMMPanther PTHR10483 1.49999648196318e-34
    HMMPanther PTHR10483:SF6 1.49999648196318e-34

    See the detailed result >

    AT2G02061.1

    Model type
    Protein coding
    Short Description
    Nucleotide-diphospho-sugar transferase family protein
    Computational Description
    Nucleotide-diphospho-sugar transferase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, stem, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Nucleotide-diphospho-sugar transferase, predicted (InterPro:IPR005069); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferase family protein (TAIR:AT1G14590.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR