K37101

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37101

Determination of introduced cDNA(s)

J013042P14 - Rice Full-length cDNAs - Original: J013042P14

full reading [+] show sequence

GACTCGCCGC CCGCCACCGC GCTCTCCCTC TCCCCCCAAT TCCATCCCTC 
CACGCCACGA TCGCCTTCCG CAAGGTAACC GCCCTCCCCT CGCCGCCGCG 
GCTCGGAGCT TGCATGCATG CACGCATCAT CATCATCGGC TCATCGCAGA 
TGTAGGGTAG GGACGGTGGT AAGTGCAGCG CCAGCTTGTG TGGCGAAACC 
TAGAGAGAGA ACACTGTTAC CTGCAGTTCC AACTACCCGT TGGATTAACT 
ATCCCTCTCT GTCCCATAAT ACTGTTCATT TTTTTGGCCT CTTCTGTTTG 
TCCCAAAATA AGTTTATTTT GATTTTTGAG TGATCATTGC ATCGGAGTTT 
ATAAAAATAG AGAATAAATG TATTGAGAGT AAGATAAAGT TAGCAATAAT 
TGCATTGTGA TTCGATAAAT TATGGGTATT TTAGATTTTT TGGTTTTGTA 
TTTTGGTACG TGTGGGATGA ATGAAAAATG GGATGGAGGT AGTAGCTTTT 
GTCAAATTCT CTTCTTTTGG GGGCATTGCA TCGCGTCCTA CATGCTTTGA 
TACATTGCCA AAGCAATCAC CTAGTCAATT TTTATTTTGT AATGAGTCAA 
TCAGTAAGTG GAGTGGTTGC ACAATTACGA TGGGCCGCCC AAAGAACGAA 
CCTTGCAGTT TGTTTGTTTG TTTGTTGCAT ATATGGATTT TCCTTTACAT 
ATTGCAATTC TAACCTAAAA GTTCACTATA CAATGGGCCC AAAGGAGGAG 
CCTTGCAGGC TGCAGCCTGT TTGTTGCACG TGGAATTTGT TTGCATATTG 
CAATCTGACC TACTTGAAAT TTCAGTTATT TATTTATGAT TCTGTTCCTT 
TACCTTGTGA GATTCATATC TTTACTATGC AGGTTTCTTC TTCAGTGCAC 
ATGTGAAACT GTACTTCACC TCCCATATAT AATTCAGTGC AGAGAGCATT 
CTTGAATAAG TATGAACCCT TATTTTGTTG GTCTTCTCGT CCCAATTGCG 
GTATCTCTTC TCCTACGGAA GAGGAGAATG GTTGGGAAGA TGAGGGCACT 
GCCAGTTGAT GTGGGTGGAG AGCCCGGGTA TGCAATCCGC AACTATCGAT 
TCAAGCAACC GGTTGAAACT CACTGGGAAG GTGTCACCAC GCTCGCCGAG 
TTGTTTGAGC AGTCCTGCAA GGATTATGTC AACATGCCGC TCCTCGGCAC 
CAGGAAGCTC ATCTCCAGGG AACAGGAATC ATCACTAGAT GGGAGGTCCT 
TTGAGAAGCT TCATCTTGGA GAGTATGACT GGAAGTGCTA CGCTGAGGTA 
TTCAAGAGTG TTTGCAACTT CGCATCTGGA CTAATTCGGC TAGGCCATCA 
GAAGACTGAT CGTGTTGCTA TTTTCGCCGA GACGCGGGCT GAGTGGCAAA 
TTGCTCTGCA GGCATGCTTC AGGCAAAATA TTACAGTTGT CACAATCTAC 
GCCTCCTTGG GAGAGGAAGC ACTGTGCCAC TCACTAAATG AGACAGAGGT 
TACTACTGTT GTATGTGGTC AGAAAGAACT GAAAAAAATG ATTGATATAA 
GTGGGCAGCT TGACACAGTA AAGCGAGTTA TCTATATCAA TGAGGAAGGA 
ATCTCAGCTG AAGTTTCTTT AGCTCAAAAA AGCACTAGCT GGATAATTGA 
GCCGTTTGAG GATGTAGGTA GATTGGGAGA TACAGCACCT GTTGATGCAA 
ACATGCCTCT CCCATCTGAC GTAGCAGTGA TAATGTATAC AAGCGGTAGC 
ACCGGATTGC CTAAGGGAGT AATGATGACC CATCGGAACG TCCTGGCTAC 
ACTTTCAGCA GTTATGACCA TTGTGCCTGA AATTGGTAAA AAGGATGTAT 
ACCTGGCCTA CCTGCCACTT GCACACATTC TTGAGTTGGC AGCTGAGGCA 
CTCATAGCTG CTGTTGGGGC TTCCATAGGA TATGGATCAC CCTTGACCCT 
GACTGATACA TCAAACAAAA TAAAAAAGGG AACACTGGGT GATGCTTCTG 
CACTCAAGCC AACACTGATG ACCGCTGTAC CTGCTATACT TGATCGTGTT 
CGTGATGGTG TGAGAAAGAA GGTGGATACA AAGGGTGGTG TAGCAAAGCA 
GTTATTTGAT GTTGCCTATA ATCGTCGACT TGCCGCAGTC AATGGAAGTT 
GGCTGGGTGC ATGGGGATTA GAGAAACTCT TGTGGGATAT GCTTGTCTTC 
AAAAAGGTGC GAGCAGTTTT GGGAGGAAAA ATTCGCTTTG TACTTTCAGG 
TGGAGCACCT CTATCAGGAG ATACCCAGAG ATTTATCAAT ATATGCCTTG 
GGGTTCCAAT AGGGCAAGGG TATGGTCTTA CTGAGACATG TGCTGGAGGA 
ACATTTTCTG AGTATGATGA CCCATCTGTT GGTCGCGTTG GTGCTCCACT 
ACCTTGTTCG TACATTAAGC TGATTGACTG GTCAGAAGGT GGATACTTAA 
CAAGTGACTC CCCAATGCCT CGAGGAGAGA TTGTCATTGG TGGTCCCAAT 
GTAACTAAAG GCTATTTCAA GAATGAAGCT AAAACAAATG AAGTCTATAA 
GGATGACGAA AAAGGTATGC GATGGTTCTA TTCTGGTGAC ATCGGGCGCT 
TCCACCCAGA TGGCTGCCTT GAAATCATTG ACCGTAAAAA GGATATTGTG 
AAGCTTCAAC ATGGTGAATA TGTGTCTCTC GGGAAGGTGG AGGCTGCTCT 
GATTGTGAGC CCATATGTGG AGAACATCAT GATCCATGCT GATCCTTTCC 
ACAGTTACTG TGTTGCACTT GTGGTAGCTG CACACAATGA GCTGGAAAAC 
TGGGCTTCGC AGCAGGGAGT TACATACACC GATTTCGTAG ATTTGTGCCA 
GAAGCCAGAG GCTGTTAAAG AAGTGCTTGG ATCTCTATCA AAGGCTGCGA 
AGCAAGCGCG ACTGGAGAAG TTTGAGATCC CGGCCAAGAT CAAGCTGATA 
TCTGAGCCAT GGACCCCGGA GTCTGGCCTT GTCACTGCTG CCCTCAAGCT 
CAAGAGGGAA GTGCTCAGGA AGACATATGA GGATGATCTT GCTAAACTAT 
ACGCCTGATG ATCAATGCTG AATTGCTGAT TAAGCCTACT CGACGTTTTG 
ACACAACCAG CTACCGTAGG ACAGAGCTCT TGTGAGCAAA CTGAAGATGC 
TGATACCGGC AGGAGGTAGC CTGAAATTTT GGAGCTGTGG TTGTTTGATC 
TTTTGGAGCT AGCACAATTA TGTGTAGCCT CATTTCACAC TTACTTCTGT 
GTCTCTGCCA TATTCTCTTG TGAATTTACA TTGTTCAAAG GAAAAAAAAA 
AGGCATTCT

Gene models with high sequence identity

AT1G77590.1 [+] show detail - long chain acyl-CoA synthetase 9
E-value: 0; Score: 999.99

InterPro Scan Digest

Program	Description	E-value
HMMPanther	LONG-CHAIN-FATTY-ACID COA LIGASE	1.4e-253
HMMPanther	ATP-DEPENDENT AMP-BINDING ENZYME FAMILY MEMBE	1.4e-253
HMMPfam	AMP-dependent synthetase/ligase	1.4e-110
Gene3D	no description	2.2e-34
Gene3D	no description	0.00057
Gene3D	no description	1.4e-14
superfamily	Acetyl-CoA synthetase-like	1.7e-121
PatternScan	AMP-binding, conserved site	0

See the detailed result >

AT1G77590.1

Model type: Protein coding
Short Description: long chain acyl-CoA synthetase 9
Curator Summary: Encodes major plastidic long chain acyl-CoA synthetase with a slight substrate preference of oleic acid over any of the other fatty acids.
Computational Description: long chain acyl-CoA synthetase 9 (LACS9); FUNCTIONS IN: long-chain fatty acid-CoA ligase activity; INVOLVED IN: fatty acid metabolic process, fatty acid biosynthetic process; LOCATED IN: chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT2G04350.2); Has 68698 Blast hits to 57242 proteins in 3549 species: Archae - 1129; Bacteria - 47028; Metazoa - 2860; Fungi - 3365; Plants - 2152; Viruses - 2; Other Eukaryotes - 12162 (source: NCBI BLink).
Link: InterPro Scan - TAIR