K37244

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K37244

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: K37244

Determination of introduced cDNA(s)

  • J033121E03 - Rice Full-length cDNAs - Original: J033121E03

    full reading [+] show sequence

    Nucleotide sequence: J033121E03 - full reading 
    GTCTTCTCTT CTTCCTTCCC TTTTTTTTTT CTCTTCCCCT CCTCTCGTAG 
    CCCACGACGG ATGCGGTTGC GGGTAGCAGG GGATGGAGGG CAGATGAAAC 
    CCGCGAGTTC TTGATTCTTG GGAGAATCAC CCCGTGCTCC TCCTCGCATT 
    GATCGCGAGA AAAGTTGTTC TTTTCTTGGT TTCTTCGTTC TGTTTGGGAT 
    TGTGGGGGTT TGGTTCTTGG CGACGCGTCG CCATGAGGCG GCATGGGTGG 
    CAGCTTCCCT ATCACCCTCT CCAGGTGGTG GCCGTGTCCG TGTTCTTGGC 
    GCTGGCGTTC GCGTTCTACG TGTTCTTCGC CCCGTTCGTC GGGAAGAAGG 
    TGTTCCAGGA CGTGGCCGTG GGGCTCTACA CGCCTCTGGT TTCATTTGTC 
    TTCTTCATGT ACATCTGGTG TGCTGCAACA GACCCAGCTG ACCCAGGTGT 
    CTTGAAATCA AAGAAGTACC TAAGATTGTA TGGAAGCGGC AAACACAAGC 
    ATCCGAAGGA ATTCAGACAT GGCATTTCAG ATTCAGGGTT GCAAGTAGAG 
    GGAACTGGAG AAAAGCAAGA ACATGAGTTT GCAGCTGCTA GTGAAAAGTC 
    AACAACTCGC TACAAAGACA ATAACCCATC TTGCTGCAGT TCAACTTCCT 
    CTGTTTTTCT CATTATTTTC TACCCTCTCT ATCTTGTTTT TTCCTGCTGC 
    CAACCACGGG AATGGTCTGA GCAGCAAGCC AGTGAGGAAG GAATGTTTTT 
    CTGCAGCCTC TGTGAAGTTG AGGTATTGAA GTACAGTAAG CACTGCAGAG 
    TTTGTGACAA ATGTGTTGAT GGTTTTGATC ATCACTGCAG GTGGCTCAAC 
    AATTGCATTG GAAAAAGAAA CTATATGAGG TTTTTTATTC TGATGACTTC 
    TTCCCTATTC TTGGTCTACA TGATTTGTGC ACTTTGGGCC AGCTTATCCT 
    ACAATCAGCA GTTGGAGTAT TGGTGCTAGT GTTCTGCTTT GTTGAGCGAA 
    AGGAATTCTC CATTCAAATT GTGTCAAAGC TTGGAAGCAG CTTCTCTGTG 
    GTGCCTTATG TTATTGTGGT GGCATCTTGT ACCATTCTAG CCATAGTTGC 
    TTTGCTGCCA ATTGCGCAAC TTCTCTTTTT TCACATTCTT CTAATCAAGA 
    AGGGAATTAG TACATATGAC TACATCATCG CCATAAGAGA GCAAGAACAA 
    GAAGAGGTTG GTGGGCAGCA GAGTCCACAG ATGTCTCGTG TAAGCTCCTA 
    CACTGGACTT AGCAGTACAA GTTCCTTTGG TGGACGACGT CGTGGTTCAT 
    GGTGTACTCC TCCAAGATTA TTTCTTGAAG ATCAGTTCGA TGTTATTCCG 
    TCAGAGGCTG GTTCATCGCA TAATTCTACT TCCAAGAGGA AAGAAGATGA 
    AGTAAGGAGG AAGAAGGGTT CAGGTGGTAT AAAAATTAGC CCATGGGCAC 
    TCGCTCGTCT TAACGCGGAG GAAGTTTCAA GAGTTGCTGC AGAGGCACGA 
    AAGAAGTCCA AAGTTCTACT GCCCATCAGA AAAGATGAGT ATGCAGTTGG 
    CCATGAAACG GACAGTAGCT ATGGAGGCAC AAGCAGCAGT AGGATTGATC 
    TAGGCCCTGA TAACAAGAGG AGAACAAGCA GAAGAGCAAG ACCTCACAAT 
    GATTTCTCTC TTAAACCTGT TGCCAAGATT TCCGCAGATG CTCTTGATAG 
    TCATGGCAGT GAGTTGGTTC CTGAAACATT ATCCAGTTTA GCACCATTGC 
    AGCTTGAGGC GCGAAGCGCT TTTCATCCAA GTAGAGCTGC ATCCTCTGCT 
    AATGGTGGTG GTTCATCACC AGACAGCAGC TTGGACTCCC CTGATCTTCA 
    TCTGTACCGA GTCTCGGCTG TCTCCTCATC TGCAGCTGAA GACCTGCAGC 
    TGACAACTCT TACAGCCCCA GGAAGCACTC CACAGCAAGG GATTGAGCTG 
    TCAAGATCCA CCAGCGACGG GTATGAAGCA TCAGGAGGCG AAGACAGTGA 
    TCGCATCCCA TCGCGGATAG TTCATCGATC TTCGAACTGG GCAAGCATCA 
    TCCTCAGTTC TGATCAAAGT GTGGCTTCAT CTGGCATCCT CGTGCCGAAG 
    AACAGGTTGT CTTGACTCCA AATCAATTCC ATCCTCAGCT TCTTTCAGAT 
    GAATGAAAAA TTGTAAATGG TCCGTGTAGA TTGTCTCGTT TTCCATCGGT 
    TTCTGGTCCT CCATAGTTTC AAATCTTGTC TCAGAGATGG TTGGATGCTG 
    CGTGAATTCT GAATTGGTTG GATGTTTTTG GTGAACTCTG AATTGTTAGG 
    TAGGGAAAGA GAGTTGATTC ATTCGTGGTG CATCCAAAAT GGTTGTAATT 
    TTGCTCTCAG ATGACAATGG AATCAATCAG AGGTTGATAT ATCTTCAGCC 
    TCCTGGGTTA ATGCC

    Gene models with high sequence identity

    1. AT1G69420.2 [+] show detail - DHHC-type zinc finger family protein
      E-value: 3e-125; Score: 231.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN 4.4e-28
    ProfileScan Zinc finger, DHHC-type 21.306
    HMMPfam Zinc finger, DHHC-type 3.2e-20

    See the detailed result >

    AT1G69420.2

    Model type
    Protein coding
    Short Description
    DHHC-type zinc finger family protein
    Computational Description
    DHHC-type zinc finger family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: DHHC-type zinc finger family protein (TAIR:AT4G15080.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR