K37630

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K37630

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37630

Determination of introduced cDNA(s)

  • J013030F08 - Rice Full-length cDNAs - Original: J013030F08

    full reading [+] show sequence

    Nucleotide sequence: J013030F08 - full reading 
    GATTGAGTAA CTTCAAATAT TCAGTTTCAG AAGAAAAAAA AAGTGACTTC 
    AAATGACCTT TTTTCAATTC TGAAGTCAGT TGAAGAATCA ACGAGTTGAA 
    TTTGTTCCGT TCCTTTGGTC TCCCTCTTGT TAATTGGCTG AAAGTCTGAA 
    ACTATCAAAC GAGCGCCCTC AGGGTCGATT GGGTTCTCTA AAATATGTTT 
    TTGGTGATGT ATTGTTCACG CTGTTCTTTC GCAGAGATGA ACAGTCATAT 
    GATTTTTTTC CCCTGTTGTA AATGAACAGT CCATGTTTAT CCAATTATCC 
    CTTCCTGATT CAGTCGTCAA ATCAATGTTT TCTCACGCTG TTTTACACCT 
    GCTGAGGAGA ATGCTAATGG TATGTTGGTC AACTGCTGTT GGTTGGATGC 
    AGTTCGCCCA CAGGAAATGC ATACAAAGAT GGTGTGACAA GAAGGGGAAC 
    ATCACATGTG AAATCTGCAA CCAGGTTTAC TCTCCAAATT ATGTCCTCCC 
    TCCAACCAAG TGTTGTTCAG CTGAAATGGA CATGGATCTT AGGCAAAGCT 
    GGGTTGGACG AATTGATCCC CATGATTCGC ATTTTCTTGC CATTGCCATT 
    GCAGAGCAGC AGCTGCTGCA AGCTGAATTT GATGATTGTG TGTCCTCAAA 
    TTCAAGTGGT GCCACATGCT GCCGAACTGT TGTTTTAATT TTGATGTTAC 
    TTTTGCTTGT GCGCCATGTA GTTGTGTTTG TGAGAGATGT TAGCATGCTG 
    CAGGATGCAA CAGTGTTGTT TAGCGCAACT CTTCAGTTCG CAGGATTCTT 
    TCTTCCATGT TATGTTATAG CCCGTTCTTG TTATGCTTTT CAACACCGGA 
    GGCGAAGACA GGTTTAGGGG CCACCTGAAC CTGGCTGGAA GCATTTACTC 
    AAAACAACTC AACACCATCA CAGAGAGACG AGAGGAAAAG CTTGTGAAGA 
    AGTAACTCAA ACTCCCTTTG CTTGGAGCCT CTGCGAAAGA TTTGGCTTAA 
    TTTCTCCCCC AACAAGATGT AGTTGCCGAT TTAGACCATG GGCCCTCGTG 
    AAGCTCAACT GTACATAGGA GAGCGACCCA CCCCCTTCGG CAAAACATTT 
    ATGTTTTCGA AATTGAATTT TAGAGAAAAG AACAAGTGGG TTTAAAAAAT 
    TTCAGTGTCT TTCCAGCTGT TAATTCTTTC TGAAGAGAAG TGGTCGATAT 
    CG

    Gene models with high sequence identity

    1. AT2G02960.4 [+] show detail - RING/FYVE/PHD zinc finger superfamily protein
      E-value: 5e-20; Score: 95.90

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 0.00026
    HMMSmart Zinc finger, RING-CH-type 0.0078
    HMMPfam Protein of unknown function DUF3675 1.8e-34
    ProfileScan Zinc finger, RING-CH-type 12.052

    See the detailed result >

    AT2G02960.4

    Model type
    Protein coding
    Short Description
    RING/FYVE/PHD zinc finger superfamily protein
    Computational Description
    RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3675 (InterPro:IPR022143), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT1G14260.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR