K37743

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K37743

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37743

Determination of introduced cDNA(s)

  • J033066K09 - Rice Full-length cDNAs - Original: J033066K09

    full reading [+] show sequence

    Nucleotide sequence: J033066K09 - full reading
    CTTGAGCTCC TCGTCTCCAC CCGCCCGGCC TTCCCACCGC CCCAGCCGCT 
    CCTCTTCCAC CTCCTCCGCC GCCTCGCCAC CTCTTCCCCG TCCCACCTCC
    CTCGCCTCCT CAACCTCCTC CCGCGGCTGC GCCACCGCCC GCGCTTCTCC
    GAGTCCGCGG CGCTCGTCGT CCTATCCGCC TTCTCCCGCG CCATCATGCC
    CGACGCCGCG CTCGACGCCT TCCGCGCCCT CCCTTCCATC CTCGGCTGCA
    ACCCCGGCAT CCGCTCCCAC AACGCCCTCC TCGACGCGTT CGTCCGCGCC
    CGTCGTTTCT CCGACGCGGA CGCGTTCTTT GCCTCCCTCT CCCATGGCGC
    CTTCGGCCGC CGCATCGCCC CCAACCTTCA GACCTACAAC ATCGTCCTCC
    GCTCTCTCTG CGCCCGTGGC GACCTCGATC GAGCGGTCAC TCTGTTCGAC
    TCCCTGCGAC GCCGCCAAGT TGCTCCCGAC CGCATCACCT ATTCGACCCT
    CATGTGCGGG CTCGCGAAAC AGGACCGCTT GGATCACGCC CTCGACCTGC
    TCGACGAAAT GCCGAGGAGT AGAGTTCAGC CTGATGTCGT TTGTTACAAT
    GCACTCCTCG GTGGGTGTTT TAAGGCCGGT GAGTTCGAGA AAGTCATGAG
    GGTGTGGGAC AAACTGGTTA AGGACCCAGG TGCAAGGCCC AACCTCGCTA
    CTTACAATGT GATGCTTGAT GGATTGTGTA AGTTTGGGAG ATTCAAGGAG
    GTGGGTGAGG TCTGGGAAAG GATGGTGGCA AATAATCTCC AACCAGATGT
    AATTACCTAT GGGATCTTGA TCCATGGTTT GTGCCGATCT GGAGATGTGG
    ATGGTGCAGC ACGAGTATAC TCTGAGATTA TCAAGACTGG GCTTGTTATT
    GATGCTGCCA TGTATAATTC ACTCGTCAAG GGGTTCTGTC AAGCAGGGAG
    GGTACAGGAA GCTTGGAAGT TCTGGGATAG TGCTGGGTTT GCAGGGCTTC
    GTAATTTAAG AACTTACAAT ATAATGATAA AGGGGCTCTT TGACAGTGGT
    ATGGTTGATG AGGCTATAGA GTTATGGGAC CTATTGGAGA AAGATGCGGC
    TTGCATTCCT GACACAGTGA CTTTTGGCAC TCTGATCCAT GGATTATGCC
    AGAATGGCTT TGCTAATAAG GCATTTACAA TATTTGAGGA AGCTCGAGTC
    AGTGGCAAAC AATTAGATGT GTTCTCATAT TCATCCATGA TCAATGGATT
    ATGCAATGTT GGGAGGTTAG TTGATGCGGT TAAAGTATAT GAGAAGATGG
    ATAAGGATGG GTGCAAACCG AATTCTCATA TTTACAATGC ACTAATAAGT
    GGGTTCTGCC AAGTATACAG GACTAGTGAT GCTGTTAGAA TTTACAGCAA
    GATGGCAGAC AATGGTTGTT CTCCTACAGT CATCACATAC AACACTTTAA
    TAGATGGTCT GTGTAAGGCT GAAAAGTATC AAGAAGCTTC AAGTGTTGCA
    AGGGAAATGG TAGAGAATGG CTTTACACCA GATATCACTA CTTATGGATC
    GTTGATCCGT GGCCTTTTTA GTGACAAGAA GATTGATGAT GCTCTTTCTA
    TTTGGAAACA AATTCTTTAT AAGGGTCTCA AGGTTGATGT GATGATGCAT
    AACATCCTAA TCCATGACCT TTGTTCTGCT GGCAAAGTTG ATGAAGCTCT
    CCATGTTTTC TCAGATATGA AAGAGAAGAA GAATTGTCCC CCAAATCTAG
    TGACTTATAA CACCCTGATG GATGGACTTT ATGAAACTGG CTATATTGAC
    AAAGCAGCAA CTCTCTGGAC CTCCATAACA GAAGATGGGT TGGAACTAGA
    CATAATTTCA TACAATACAA GAATCAAGGG CCTATGCTCT TGTGACAGAA
    TACATGAGGG GATCCAGTTA TTGGATGAGG TTCTCTCACG AGGCATTATA
    CCGACTGTAA TTACATGGAA TATACTTGTC AGGGCTGTAA TCAAGTATGG
    ACCTATCCAA GTATAACACC TTCAAAGTCC TTATGCTTCT GGTGATGAGA
    TATCCTGCTC GTAGATGACC TGAGCAACCA AACCAATGAA TATTAGACCC
    AGAGCTGCAA CCTTCCTCCA CTCCACCTCA GGTGTTGCGA AGACGGCATT
    TGCAATTGTA AGCCCGAGTA TTGCCATGAG CCCAAGGTAA ATGTTCATCC
    TAGTTTTTGA TCCTGCACTT TCTTTTGCAA TATCTTTGAC CTTTTGTGCT
    TCTAGCTTGG GTATTGGTTT TACTGTGAGT TTCTTCTTGT TGCGAGGCTT
    CACCTTCCCA AGGCTTTTGA AGAACATACC TTCATTTTTC TCCTTCTCAA
    TCCAATCTTC GAAGTCTTCA AGCACCCTCT CGTTCATTTC TATCTCCTGC
    CTTTGAACTT CAGCAGTCTC CTCAAAGGCC TGCATCTTGC TGTCCAGCCT
    CTCCATTATC TACCACATCA GATCGAACTC GGTGTCCGCA TCCTTCGCAA
    ACTTGGTCAG GTAAGCAGAG CGCTCGTCCA AGAAGCTTGT GATGCGCACC
    TTCTGCGCCT GAAGCATTGC GATCTTCGCA AGGACCTCCT GCTGGCGTTT
    GTCTCCGCCA AGCGACGACG AAGCATCGGA TCCATCATCT TCAGAGCTGC
    AGGCACGGAT ACAAGATCTC TTCCTCTTTA GCAGCGCACA TCGGTATGGG
    GAGGATCTGT GTAGCGAAGG AATGGACATC CTAATGGTGT GAAGATTAAG
    CATCTCCTCT TAATCTTTGC TATGCTGCTG CTCTTGCTCT GCGAAGTACT
    ATCGTGGAAG GATTTGTTTC TGCCCACCAC TCGATGCTTG AGCAGTTGAG
    CTTGAGTTTG GGAACGATAT CCTTTGGCTT TTAGCTTTCA TGACAAGACC
    AATTTGCCCC TTGCATGTTG GGCATTCGCA GGTCCATTTC TTGGACGTTC
    CTTGCGTGTT GGGAATTATC AACTAGGTCC ATTGTTTGGA CCTTATCTGA
    GACATTGGGC ACAACTTGTC GATACTTTAG TAAAAAAATA TCTTCTTACC
    G

    Gene models with high sequence identity

    1. AT3G09060.1 [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
      E-value: 6e-149; Score: 525.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    HMMPanther PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3.6e-175
    HMMTigr Pentatricopeptide repeat 0.21
    HMMTigr Pentatricopeptide repeat 3.9e-07
    HMMTigr Pentatricopeptide repeat 1.1e-09
    HMMTigr Pentatricopeptide repeat 1e-06
    HMMTigr Pentatricopeptide repeat 2.7e-09
    HMMTigr Pentatricopeptide repeat 5.3e-09
    HMMTigr Pentatricopeptide repeat 0.035
    HMMTigr Pentatricopeptide repeat 7.1e-07
    HMMTigr Pentatricopeptide repeat 3.4e-06
    HMMTigr Pentatricopeptide repeat 7.1e-11
    HMMTigr Pentatricopeptide repeat 1.8e-08
    HMMTigr Pentatricopeptide repeat 1.6e-10
    HMMTigr Pentatricopeptide repeat 4.5e-05
    HMMTigr Pentatricopeptide repeat 1.6e-06
    HMMTigr Pentatricopeptide repeat 1e-05
    HMMTigr Pentatricopeptide repeat 2.5e-07
    ProfileScan Pentatricopeptide repeat 11.619
    ProfileScan Pentatricopeptide repeat 6.719
    ProfileScan Pentatricopeptide repeat 12.014
    ProfileScan Pentatricopeptide repeat 10.435
    ProfileScan Pentatricopeptide repeat 12.77
    ProfileScan Pentatricopeptide repeat 11.816
    ProfileScan Pentatricopeptide repeat 10.654
    ProfileScan Pentatricopeptide repeat 7.278
    ProfileScan Pentatricopeptide repeat 13.691
    ProfileScan Pentatricopeptide repeat 10.139
    ProfileScan Pentatricopeptide repeat 12.003
    ProfileScan Pentatricopeptide repeat 13.022
    ProfileScan Pentatricopeptide repeat 10.052
    ProfileScan Pentatricopeptide repeat 11.466
    ProfileScan Pentatricopeptide repeat 9.997
    ProfileScan Pentatricopeptide repeat 11.312
    superfamily TPR-like 1e-21
    superfamily TPR-like 2.6e-21
    HMMPfam Pentatricopeptide repeat 0.0002
    HMMPfam Pentatricopeptide repeat 4.1e-06
    HMMPfam Pentatricopeptide repeat 0.00012
    HMMPfam Pentatricopeptide repeat 1.2e-06
    HMMPfam Pentatricopeptide repeat 2e-05
    HMMPfam Pentatricopeptide repeat 5.4e-05
    HMMPfam Pentatricopeptide repeat 7e-06
    HMMPfam Pentatricopeptide repeat 4.7e-05
    HMMPfam Pentatricopeptide repeat 1.3e-07
    HMMPfam Pentatricopeptide repeat 5.4e-05
    HMMPfam Pentatricopeptide repeat 8.9e-08
    HMMPfam Pentatricopeptide repeat 0.0023
    HMMPfam Pentatricopeptide repeat 2.3e-05
    HMMPfam Pentatricopeptide repeat 0.0021
    HMMPfam Pentatricopeptide repeat 0.00094

    See the detailed result >

    AT3G09060.1

    Model type
    Protein coding
    Short Description
    Pentatricopeptide repeat (PPR) superfamily protein
    Computational Description
    Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G53700.1); Has 58888 Blast hits to 14270 proteins in 310 species: Archae - 10; Bacteria - 38; Metazoa - 658; Fungi - 1156; Plants - 55027; Viruses - 0; Other Eukaryotes - 1999 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR