K37815

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K37815

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37815

Determination of introduced cDNA(s)

  • J023057D05 - Rice Full-length cDNAs - Original: J023057D05

    full reading [+] show sequence

    Nucleotide sequence: J023057D05 - full reading 
    GATAGCCATA GCTCATCATC CACCCTCTCT TCCTTCCTTC CTTCCTTCCT 
    TCCACACAGA CCAGACCAGG CATCCCGACA CTACACGCAG ACTCTCGACT 
    TTGTCACTAG CATCATTGCT TGATGATCGA TGCTGAGCTG CAACCAAGCA 
    CCAGCATATC CTTTCCTTCA TTCCTTCCTG GTGCTGGTAG AAGAAGAACA 
    AGCTAGCTAG AGTGATAAGA GCTAGCTACC TTGCAGATCG ATCTCCGGCC 
    AGCGATTGAT CCCATCCAGT ATAATAATGG CGGCCATCAC GCTCCTACGT 
    TCAGCGTCTC TTCCGGGCCT CTCCGACGCC CTCGCCCGGG ACGCTGCTGC 
    CGTCCAACAT GTCTGCTCCT CCTACCTGCC CAACAACAAG GAGAAGAAGA 
    GGAGGTGGAT CCTCTGCTCG CTCAAGTACG CCTGCCTTGG CGTCGACCCT 
    GCCCCGGGCG AGATTGCCCG GACCTCGCCG GTGTACTCCA GCCTCACCGT 
    CACCCCTGCT GGAGAGGCCG TCATCTCCTC GGAGCAGAAG GTGTACGACG 
    TCGTCCTCAA GCAGGCAGCA TTGCTCAAAC GCCACCTGCG CCCACAACCA 
    CACACCATTC CCATCGTTCC CAAGGACCTG GACCTGCCAA GAAACGGCCT 
    CAAGCAGGCC TATCATCGCT GCGGAGAGAT CTGCGAGGAG TATGCCAAGA 
    CCTTTTACCT TGGAACTATG CTCATGACGG AGGACCGACG GCGCGCCATA 
    TGGGCCATCT ATGTGTGGTG TAGGAGGACA GATGAGCTTG TAGATGGACC 
    AAATGCCTCG CACATCACAC CGTCAGCCCT GGACCGGTGG GAGAAGAGGC 
    TTGATGATCT CTTCACCGGA CGCCCCTACG ACATGCTTGA TGCTGCACTT 
    TCTGATACCA TCTCCAAGTT TCCTATAGAT ATTCAGCCTT TCAGGGACAT 
    GATAGAAGGG ATGCGGTCAG ACCTCAGAAA GACTAGATAC AAGAACTTCG 
    ACGAGCTCTA CATGTACTGC TACTATGTTG CTGGAACTGT GGGGCTAATG 
    AGTGTTCCTG TGATGGGTAT TGCACCCGAG TCGAAGGCAA CAACTGAAAG 
    TGTGTACAGT GCTGCTTTGG CTCTCGGCAT TGCAAACCAG CTCACAAATA 
    TACTCCGTGA CGTTGGAGAG GACGCGAGAA GAGGGAGGAT ATATTTACCA 
    CAAGATGAAC TTGCAGAGGC AGGGCTCTCT GATGAGGACA TCTTCAATGG 
    CGTTGTGACT AACAAATGGA GAAGCTTCAT GAAGAGACAG ATCAAGAGAG 
    CTAGGATGTT TTTTGAGGAG GCAGAGAGAG GGGTGACCGA GCTCAGCCAG 
    GCAAGCCGGT GGCCGGTCTG GGCGTCTCTG TTGTTATACC GGCAAATCCT 
    TGACGAGATA GAAGCAAACG ATTACAACAA CTTCACAAAG AGGGCGTACG 
    TTGGGAAGGC GAAGAAATTG CTAGCGCTTC CAGTTGCATA TGGTAGATCA 
    TTGCTGATGC CCTACTCACT GAGAAATAGC CAGAAGTAGG AGGCGGGAAG 
    AGGAGATAAA GGGAAGATGA TGAGCAGGTT AGGCTTAGAT AGGAAAAATC 
    AGACAGCATC TGCCTTCCGA TTAATGTTGA GGAAATTATA TTATTGTGTG 
    TATCATACAT AGCATGTATA GGGAAAATGC TGCAGGCAGG CAGGCAGGCT 
    AGGTGATGGT TGAATATTTC CTTCACATCA TGTATGTATA TCCTTCCTTG 
    ATGCTACAGC ACATATGTAT GTATGACTCT GAAGAAAGAG CAACCTGTAT 
    AGTAGCTAAC CGGCTATGGC CTATGTATGG GCCGCAGAGG TGAGCAAACA 
    AAAATCATCA TCCATGGATT GATTGATTGA TTGATTGATA CAGTACTACC

    Gene models with high sequence identity

    1. AT5G17230.2 [+] show detail - PHYTOENE SYNTHASE
      E-value: 2e-156; Score: 549.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Squalene/phytoene synthase, conserved site 0
    PatternScan Squalene/phytoene synthase, conserved site 0
    superfamily Terpenoid synthase 1.7e-96
    HMMPfam Squalene/phytoene synthase 6e-77
    Gene3D Terpenoid synthase 6e-82

    See the detailed result >

    AT5G17230.2

    Model type
    Protein coding
    Short Description
    PHYTOENE SYNTHASE
    Curator Summary
    Encodes phytoene synthase.
    Computational Description
    PHYTOENE SYNTHASE (PSY); FUNCTIONS IN: phytoene synthase activity, geranylgeranyl-diphosphate geranylgeranyltransferase activity; INVOLVED IN: carotenoid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Squalene/phytoene synthase, conserved site (InterPro:IPR019845), Terpenoid synthase (InterPro:IPR008949), Squalene/phytoene synthase (InterPro:IPR002060); Has 5521 Blast hits to 5513 proteins in 1034 species: Archae - 81; Bacteria - 2497; Metazoa - 59; Fungi - 72; Plants - 997; Viruses - 0; Other Eukaryotes - 1815 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR