K37824

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K37824

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37824

Determination of introduced cDNA(s)

  • J013105J01 - Rice Full-length cDNAs - Original: J013105J01

    full reading [+] show sequence

    Nucleotide sequence: J013105J01 - full reading 
    GGGAAAAACA GCTTCTTCTC CCCTCTAACC CAAAAAGGCT GAACCTCCAC 
    CTTCACCGCC TCCGCCTCTT TGACCTCCTC CTCCGCCATT GCCGACCACC 
    CCAAGCTCTC CCCCCTACAG GAGCCAAGAG AAGGGGCACC GTGCCGTTTC 
    TTGGACGGCG GCGGCGATGG ACGGCGGCAG GGTCGGGGGC GACTACATTT 
    CCAGCCTCCT CAGCTCCTCC CCCCGGCTCG ACTTCGGCGT GCCGGTGCTG 
    GACGCCATCG TGGCGCCGGG AGGCGGCGGC GGCGGCGGCG ACTGCAGCCT 
    CGACAAGCTC TGCGGCGACC CGGGGTTCGC GGAGCGCGCC GCGCGGCTGT 
    CCAGCTTCAA CAACGGCGGC GGCGGTGTTG GGCAGCGGTA CGGCGGCGCG 
    GGGGCGGGGC TCTTCGGGAT GCCTCCTCCG GCTCCCGGCG ACTTCGCCGG 
    AGGTGGCTCC AGGGAGGCGT CCTCCGTGTC CGACCCCGCC TCCTCGGCGA 
    TGAAGGACGC CGCCGCCAAT GCCAAGAAGA GGAAGTCCAC GGCGGCGGCG 
    GCCGCCGCCG CCAAGGGCAA AGGCAAGGAG CCTCCGGTTG GGGAAGAGAA 
    GGAATCAGAT GGCAAGAGGT GCAAGACGGG CAATGGCGAG AAGGAGAGCT 
    CGGTGAAGCC GAAGGCGGAG CAGGCCGGGA GCGACAGCTC CGTCGAGACG 
    GCGGCGGTGG CGGGCAGAAG CAAGGGAAGG GGAAGAATGC CAAGCCGGTG 
    GAGCCACCCA AGGACTATGT CCATGTCCGG GCGAGGCGAG GCCAAGCCAC 
    TGACAGCCAC AGCCTCGCTG AGAGGGTCAG AAGAGAGAGG ATCAGCCAGA 
    GGATGAAGGT TCTCCAGGAC CTGGTTCCAG GATGCAACAA GGTAATTGGC 
    AAGGCACTCA TGCTTGATGA GATCATAAAC TACGTGCAAT CGCTTCAACG 
    GCAAGTTGAG TTCCTGTCCA TGAAGCTAGC AACTGTGAAT CCACTTGATT 
    TCAGTAACCT GCCTACTCTG CTGCAGAAAG ATATGTTCCA AGCATGCGGC 
    CCTTCAGCGA GCTCGGTTTT CTCATTAGAA AGCTCCAATT CTGCTTTTCG 
    GTTTGCCGAA CAAGGAGATG TTTTCCAACA GTTTGCTCAA AACAGCATGG 
    AAAGCCAGTG CACCCTGAAT CAGTTGGACC TGGCTCTATC TCAGGCTACA 
    AATGCTGCAC AGTATGCTTT TCAAGATGGA ACAGCCGGCG CAAACTTGCA 
    GCAAAGGAAC TTCTGGGAGG ATGATCTCCA AAGTGTTTTC CATATTGAGA 
    ATGGACAGAG CCAGGAGAAT GGGGTTTCAG CACCAAACTT CCATGGTCAG 
    CAGCAAGCAG GCCACATGAA AATGGAGTTC TAACCTGCTT AGGCCACACT 
    GATCAAGGAA AAGAATGACA ATCTGTACAT AGGGAAGAGA CCCAAGTGCA 
    AAACTCCCAT TGGCAAAGCT AGTGAAGCTC TCTGAACTCT TGAAGCTAAC 
    AGTCATCATT AGGCTCTTAA GAGAGGATAT TTCTTAATCA TAGTCTGCCT 
    GTAGGGCGAT GTGATTCTTT TGGTACCTAC TATTTGAGAT GATTATATTT 
    TGATATAACC GTAACAAATT AAAATAGTTA ATTTGTGTAT AAAGATATGG 
    TGCAGATATT ACAAAGCACC CTCTTCTTCT TCTTTCTGAT TATGTATGAG 
    CTGGCCAATT AGCAGCTAGC TGGATGGATG GAACCATGTA TTACCACTGT 
    TGCATTTTGT CTATGATGAT AGTTATCCTC ACCTTATC

    Gene models with high sequence identity

    1. AT5G48560.1 [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
      E-value: 4e-43; Score: 173.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Helix-loop-helix DNA-binding domain 11.961
    Gene3D Helix-loop-helix DNA-binding 1.5e-06
    HMMSmart Helix-loop-helix DNA-binding domain 9e-10
    superfamily Helix-loop-helix DNA-binding 4.4e-15
    HMMPfam Helix-loop-helix DNA-binding domain 9.3e-07
    HMMPanther CENTROMERE-BINDING PROTEIN 1, CBP-1 2e-06
    HMMPanther STEROL REGULATORY ELEMENT-BINDING PROTEIN 2e-06

    See the detailed result >

    AT5G48560.1

    Model type
    Protein coding
    Short Description
    basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    Computational Description
    basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT3G07340.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR