K37829

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K37829

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37829

Determination of introduced cDNA(s)

  • J013054P19 - Rice Full-length cDNAs - Original: J013054P19

    full reading [+] show sequence

    Nucleotide sequence: J013054P19 - full reading 
    CTCCCCCATC TTCTTCTTCT CTCCCGCACT CCAAAGTCGA AACCCTCCCA 
    AAACCCTAAA CCCCCCATGG CGCCGCCCGT CCCCACTGCC GCCGCTCGCC 
    TCGTCCTCCG CCGCCTCCTC TCCACGGCGG TCGCCGAGGC GGAGGCGGCG 
    GCCGTGGCTC CCGCCGCCGA GAAGGCCGCG GCGAAGGGCG CCAAGACGGC 
    GGCGGCGGCG GGGGAGGAGA AGGACGCGCG GTCGCTGTAC CGGCGGCTCT 
    CGGCGCTCGG GGGCGCGGGG GAAGGGAGCG TGTCGCGGGT GATGAACAAG 
    TGGGTGCGCG AGGGGCGGGA GGCGCGCGCG GCGGATCTCG CCAAGTACGT 
    CAAGGAGCTT CGCAAGTACA AGCGCCACGC CCACGCCCTC GAGTTGATGG 
    AATGGATGGT TAACACTAAG GGTATGAACA TGTCATACAC TAACCATGCC 
    ATACGTTTGG ATCTCATTTA TAAAGTGCGT GGCATTGAAG CAGCAGAACA 
    ATACTTTGCT GGCCTCCCTG ATCCAGGCAA GAACCATAAA ACTTATGGTG 
    CACTTTTGAA CTGTTATTGC TCTGCTAAAA TGGAAGACAA AGCAACAGAC 
    ATCTATCGCA AGATGGACGA ACTAGGAATC TCATCCAGTA CTCTTCCTAT 
    CAACAACCTG ATGTCTCTTT ACGTGAAGAT AGGCCAGCAT AGGAAGGTTA 
    CAAGCCTGTT TGAGGAGATG AAAGTGAAGA ATGTTAAACC GGATAACCTC 
    ACATGCTGCC TGCTGATGAG TAGCTATGCA GCATTGAACA AGATAGATAC 
    TGTTGGAGAG GTTCTAAAAG AAATGGAAGA AAAAAAAGTG GCTCTAGGGT 
    GGTCTGCATA TAGCACACTC GCTTCCCTCT ATGTGAATGC TAATATGGTT 
    GAAGAAGCGG AATCTGCTTT GAAGAAACTC GAGAGTCTCA TCGATGTTCA 
    AGCTGGCAGG CAGCCTTTTG ATTTCCTTAT GAGCCTATAT GCATCAGTAG 
    GCAATCTGAG TGAGGTCAAC AGAGTGTGGA ACCTGATAAA GGCTAATTTT 
    CAGAAGGTGA CTAACACCAG CTACCTCGGC ATGCTTCAAG CTCTTTATAA 
    ACTCAATGAC GATGATCGCA TGAAGCAGAT TTATGAGGAT TGGGAATCTA 
    ATTATGAAAA TTATGATGCG AGGCTGACAA ATATGATGAC CCGAGCACAT 
    CTAAGAAATG GCTTGACCAA GGAAGCTGAA TTACTATGGG AGAAGGTTAA 
    GGAAAAAGGT GCAGAATTTG ATTCCAAAAC ATGTGAGTTG TTTCTAGAGC 
    ATTACATGGG GAAAGGGGAC ATGACCTCCG CTTTGAACTG GGTTGAAAAT 
    ATGACCAAAC TTCCCAGGAA GAAATCGAAG CTAGATCAGG AGAAGATCAG 
    CTGTTTCTTG AAGTATTTCG AAGAGCACAA GGATGTGGAA GGTGCCGAAA 
    GGTTTCTCAA CTGCTTGAGA ACGTCAGGAT GCATTGATGG CAAGGCATAT 
    GAGTCCCTCC TGCGGACCTA CTTGGCGGCT GGCAAGACAA GCCGTTCGAT 
    CCGCCAAATG ATCAAGGAAG ATAAGATTGA GATATGCTAT GGCATCGGGA 
    AATTACTCAA GAGGATTGCC GACAAGGGAC GCTGAAATGT TTATCCTCGG 
    TAATTTTACT TTGTCGGTGA CACGTGATTC TTCGGCGAGC GGCACAAAGC 
    AGATTCGTTT GAGTGAACTG TTCTCCCTTC TTCCTACTGC TCCATGTAGA 
    GGATGATATA CCTCATGGCT AGGATGCTGT TCCAGCCTTT TCTTGCTTCT 
    TTTTTTCAAG AAGCAGAGGC ATGCTAGGGT AAAGGGTTTT TTCTTCAAGT 
    GCAACGTGTA GTCTTGTCTG AGGAGGCTTT TCTCCAACAC TTCTTTTTTG 
    CTTACTTTCT GAACGAAATG GCTTCTCCAG ACATACAGTA CTGAAGCAAG 
    AATCCTACTA CAGAATCGTT GCTGTTTCC

    Gene models with high sequence identity

    1. AT4G01990.1 [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
      E-value: 1e-84; Score: 311.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Pentatricopeptide repeat 10.622
    ProfileScan Pentatricopeptide repeat 9.427
    ProfileScan Pentatricopeptide repeat 8.265
    ProfileScan Pentatricopeptide repeat 6.029
    ProfileScan Pentatricopeptide repeat 5.174
    ProfileScan Pentatricopeptide repeat 8.155
    ProfileScan Pentatricopeptide repeat 5.163
    ProfileScan Pentatricopeptide repeat 5.733
    ProfileScan Pentatricopeptide repeat 5.525
    superfamily TPR-like 4.8e-13
    superfamily TPR-like 0.00024
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMTigr Pentatricopeptide repeat 3e-07
    HMMTigr Pentatricopeptide repeat 0.0015
    HMMTigr Pentatricopeptide repeat 0.02
    HMMTigr Pentatricopeptide repeat 0.38
    HMMTigr Pentatricopeptide repeat 0.093
    HMMPanther DNA-BINDING PROTEIN 1.4e-113
    HMMPanther PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1.4e-113
    HMMPfam Pentatricopeptide repeat 2.6e-05
    HMMPfam Pentatricopeptide repeat 0.00044
    HMMPfam Pentatricopeptide repeat 0.15
    HMMPfam Pentatricopeptide repeat 0.074
    HMMPfam Pentatricopeptide repeat 0.074

    See the detailed result >

    AT4G01990.1

    Model type
    Protein coding
    Short Description
    Tetratricopeptide repeat (TPR)-like superfamily protein
    Computational Description
    Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G02370.1); Has 4131 Blast hits to 2907 proteins in 125 species: Archae - 0; Bacteria - 8; Metazoa - 3; Fungi - 28; Plants - 4015; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR