K38044

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38044

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38044

Determination of introduced cDNA(s)

  • J013081M15 - Rice Full-length cDNAs - Original: J013081M15

    full reading [+] show sequence

    Nucleotide sequence: J013081M15 - full reading 
    CAAACCCATA CGACTCCTCT GCTTCTCGCT TTCTTGATTT CTTTCCTTGC 
    TGCTTGGCGC CAACGATGCG AGTCATGCTA CTCCATTTCC CTGTACTTGT 
    CACCGATGAG TAATTTTTAA TTTTAACCAT AAGTAGTTTT AAAATTATCA 
    TATTATTAAG CGTACAACAT ACTTTCACAA TATAAGTATT TTTAAAAAAA 
    TTTATAGACT TGTAGCTTAA ATATGAGTGG TTAAATTTAA ATATGAAACA 
    ATATCCTGTG GTCATTAGTC ATCACCTACG TAAGCGGAAC TGTAAATGTT 
    GCTCATATGA TTTGGCTACT TGCAGAAGTT GACGGTTTTG ACAGAGATTG 
    GTGATGGATA TTTTCAACTT TAGGACACTA AAGAATATCG TTCGCATATA 
    CCGTCAACAA GGAGTCGACA AGATTCCAAT CAATTCCGAT GCAAGCTTTA 
    TATATATTTC AAACTAGAAA AGACATATCA CCATCGTTCC ATCAATGTGG 
    GATATGTTTA TGTATAGGCC TAGGAATACC TCATATTAGG AATTTACCTA 
    TGTGACCTAT ATTTTTTATA AGTTGCTGGT TTTTTTCTTA TTGGTTTTTC 
    AATGAAATAC ATATAAAGCA TAACAACCTC ACAACATAAA AAGGAAAGTG 
    GATTCTAATC CCTCGAGATG ACGTCCCCTC ATGTATCTTT GTTTTCTTCA 
    AATTCAATAA AAATAGTTAT GAAAAATTAT TTAGAGTATA GTGATATTTA 
    TTGGTCCACA AAAATCAAAG AAAAAGTGGC CTACACGTTA AGTAAAAAAA 
    GATAAATCTG GGTATGAATA ATTCGTTACT ATTAATTTAT CTTTTTTTAT 
    CTCGGTGTGT GAGTTGAATT CGGACCTAAG ATTTTGTGGA GTGATATATA 
    TACATTGTAT GAGTGTTGTC AAATTCTTTG ATAATTTTTC GTAACTGTTT 
    GGATGCTTTT TAGACAAACA AGGGAACATC ACCTTTAGGG ATCAAAATAG 
    TTTATCCATA GAAATCTGTA AATTTATTGT AAACTCACTC TAACTTAAAG 
    TTTGCTGTAT TTATTTTTTG AAATTGATTT CTCAAATATG CCTTTTTACC 
    CTTAGCTCCT ACGCAGTTTT ATTTTGTTAT ATTGTCAAGT ATGCACATCA 
    AAGTATAGGT GTTAAGTTTA AGTTGTTTAA ACTCTTTGAG CGAAAAAAAA 
    TTGGCATGTT AGTTGTTGAT GTTGATCTAA TAATTTATAA TTAGAAAGAA 
    AACTCGATCA CTTGAGAAAT AGATAATCCC AAAATACAAT GTATCTACCG 
    TTCCTGTGGA AACTGAACCA TTTCCCACAC AAAGTTCGTG CACCACAAAT 
    AATGATACAA AAGCGGTAGG TGTGAGAGAA CACCTCACAT ATAAACGAGA 
    AGTGGACGTA GCTATCGATC GATCAGTCCA ACCATGGCAC AATCTGCTCT 
    GCTCTGCTCT GTTTGTTTGG ATATGCAGCT AGCTACTAAC CAGCTAGACA 
    CTGGTACGTA TAACACTTTG CCTTTGTGTC TGTATGTCTG ATACGAATGG 
    ATGATTGATT TTGTGTCGCT GCGGTGCGGT GCATAACTTT GCAAAATGCA 
    GATAAGGGAG TCGCGGCCGA AGGTGACGCT GGTGGCGCGC ATGGCGGCGT 
    CGGTGGCCAA CTACGACTAT ATCGTCGACT GGGAGTTCCA GATGGACGGC 
    CTCGTTCGCA TCAAGGTTGG GCTAAGTGGG ATCCTCATGG TGAAGGGCAC 
    CCAGTACTCC CACATGAACC AGGTCCATCA AAATGACAAT ATGTACGGCA 
    CCCTTCTGTC TGAGAACGTT ATTGGCGTCA TCCATGACCA CTTTGTCACT 
    TTCCGGCTCG ACATGGACAT TGACGGCGCC GACAACTCCT TCGTCAAGGT 
    GGCGATGGCA CGACAGAACA CCGGCGCCGG CGAATCCCCT CGTAAGAGCT 
    ACCTGAAGGC TACCCGACAT GTCGCAAGGA CGGAGAAAGA TGCCCAGGTC 
    CGCCTGAAGC TATATGAGCC ATCCGAGTTC CACATTGTCA ACCCCATGAA 
    GAAGACACGA GTTGGGAACC CTGTTGGTTA TAAGGTTGTC CCAGCCGGTA 
    CTGCAGCTAG CCTGTTGGAT CCAGAGGACC CACCTCAGAA GAGGGGTGCA 
    TTCACAAATA ATCAGATTTG GGTGACACCC TACAACAAAA CAGAGGAATG 
    GGCTGGTGGT CTATTTGTCT ACCAGAGCAA AGGGGAGGAC ACACTTGCAA 
    CTTGGTCCGA AAGGGACCGT CCGATCGAGA ACAAGGACCT GGTGCTGTGG 
    TACACGCTGG GGTTTCACCA TGTCCGGTGC CAGGAGGACT TCCCCATCAT 
    GCCCACGGTG TCGTCCAGCT TCGACCTTAA GCCAGTGAAC TTCTTTGAGA 
    GCAACCCCAT CCTAGGGCAG CGTCCGACCC AGGAGAACGA CCTGCCGGTG 
    TGTGCCGCCG CTGCCACGAC CTCTTGAGAC GACAGCGGAT CACCGACATG 
    TGTGCGTGCA TGGTCGATGC TTCGGTGTAT CGATCTACTG ATATGGATTG 
    TTCATAGTGA AAGAATGTAT CGGTACATCT ACGGATTTGG AGCTAGCCAT 
    GGCTGGCTAT CTATGTTGCT CTATATATGT ATGAGCGGAT GTATGTGCAC 
    TGCAGTGGTA TGAACATAAT TGAGAACCTG AAAGGAGCAG GCTTCAAGGC 
    TGC

    Gene models with high sequence identity

    1. AT4G12290.1 [+] show detail - Copper amine oxidase family protein
      E-value: 1e-127; Score: 454.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Copper amine oxidase, C-terminal 1.2e-95
    superfamily Copper amine oxidase, C-terminal 4e-92
    PatternScan Copper amine oxidase 0
    HMMPanther COPPER AMINE OXIDASE 3.4e-151
    HMMPanther Copper amine oxidase 3.4e-151
    Gene3D Copper amine oxidase, C-terminal 1e-88

    See the detailed result >

    AT4G12290.1

    Model type
    Protein coding
    Short Description
    Copper amine oxidase family protein
    Computational Description
    Copper amine oxidase family protein; FUNCTIONS IN: quinone binding, primary amine oxidase activity, copper ion binding; INVOLVED IN: oxidation reduction, amine metabolic process; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: Copper amine oxidase, N-terminal (InterPro:IPR016182), Copper amine oxidase, N2-terminal (InterPro:IPR015800), Copper amine oxidase, N2/N3-terminal (InterPro:IPR015801), Copper amine oxidase, N3-terminal (InterPro:IPR015802), Copper amine oxidase (InterPro:IPR000269), Copper amine oxidase, C-terminal (InterPro:IPR015798); BEST Arabidopsis thaliana protein match is: Copper amine oxidase family protein (TAIR:AT1G62810.1); Has 1550 Blast hits to 1547 proteins in 275 species: Archae - 14; Bacteria - 376; Metazoa - 251; Fungi - 449; Plants - 243; Viruses - 0; Other Eukaryotes - 217 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR