K38342

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38342

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38342

Determination of introduced cDNA(s)

  • J033046D23 - Rice Full-length cDNAs - Original: J033046D23

    full reading [+] show sequence

    Nucleotide sequence: J033046D23 - full reading 
    GCCCGTATCA TCTTGCTCCC CAAACCAAGC CAACCCCCTC GACGGCCGGA 
    ACACATCGGG GGGACGCAGC CATGGTGCTC GAGGCGACGA TGATCTGCAT 
    AGACAACTCG GAGTGGATGC GGAACGGCGA CTACTCGCCG TCGCGATTCC 
    AGGCTCAGGC CGACGCCGTC AACCTCATCT GTGGCGCCAA GACCCAGTCC 
    AACCCGGAGA ACACGGTGGG CGTCATGACG ATGGCCGGAA AGGGCGTGCG 
    CGTGCTCGTC ACTCCCACCA GCGACCTCGG CAAGATCCTC GCTTGTATGC 
    ACGGACTTGA AGTTGGTGCT GAAGCAAATT TGGCTGCAGC AATTCAGGTT 
    GCTCAGCTGG CTCTGAAGCA TCGCCAGAAT AAGAGGCAGC AACAGCGGAT 
    TATAGCTTTT ATTGGAAGCC CTGTGAAATA CGACAAGAAA GTTTTGGAAA 
    CAATCGGGAA AAAGCTGAAG AAGAATAATG TGGCTCTTGA CATCGTTGAC 
    TTTGGTGAAA CCGATGATGA TAAGCCTGAG AAACTGGAAG CGCTAATCTC 
    TGCTGTGAAC AGTAGTGATA GCAGCCACAT CGTTCATGTC CCTCCCGGTG 
    AAAATGCCCT TTCCGATGTG CTTATAAGTA CTCCTATCTT CACTGGTGAA 
    GAAGGTGGAA GCGGTTTTGC TGCTTCTGCA GCAGCAGCAG CAGCTACTGG 
    TGCAGCTGGA TTTGAATTTG ATGTGGACCC AAATGTAGAT CCAGAATTGG 
    CACTCGCCCT GCGGTTGTCC ATGGAAGAAG AGCGAGCAAG GCAAGAGGCT 
    ATTGCGAAGA AGGCCGCAGA AGAATCTTCT GGTGCTGAAA ATAAGGACCA 
    TGCCTCAAGC TCAAACGCTG ATTCTGTTAT GGCAGAAGCG GAACCTGCCT 
    CAAATGCTGC TGATGATAAA AAAGATCAGC CGAAGGAAGA TGATGATGCT 
    CAGCTACTAC AACAGGCTCT TGCAATGTCA ATGGAGGAGG GTTCTTCAGG 
    GGCTGCAGCG GCTGATGCTG CTATGGCAGA GGCTGCTGTA GATGACCAGG 
    ACTTGGCACT AGCTCTTCAA ATGTCTGTCC AGGACGCAGG CGGGTCTAGT 
    CAGTCTGATA TGAGCAAGGT GTTTGAAGAC AGATCATTTG TTACATCCAT 
    CCTTAACTCT CTCCCTGGTG TTGACCCCAA TGACCCCTCT GTGAAAGATT 
    TGCTGGCATC ATTGCATGGG CAGGGCGAGC AAGAGAAGAA GGAAGACAAA 
    TCAGACAAGC CAGAAGATGA GAAGAAATAA ATCAACTCCT TTGTGTCTTC 
    CTTGTAAGAT TTCAGTATGC TGTCTTACCT CCATATCCGA TATGCATGTT 
    TTGCATATAG TCTATTCAGC CCTTGATGAC TATCGTTCTG GTTGTACGAT 
    ATCTTCTACT ATAAACTAGA AGCTGGCGAG TTGGCTGCAT AAATTTGAAT 
    TTTGGAGCAG CAAGTTATGT CCTCAAGATA CTTGCATGTA AAACTGGTCT 
    ATGTGTGCAG AGGTTCTGTC GCTCTGCTCT TTTTAGGACT GTCGTTTCAT 
    TGTTCACAAT TATGATTAGC ATATTACTGT TTCTATGCAA AACTAACGTG 
    TTAACGTGTG CAATTTGCAT CAAAGTTTAC CATTTACCCC ACGCAACTTA 
    TCAAAACGTT GCGCGACCTC GCAGGCAACC ACCTCTTGAT CAATCTCGCA 
    GGCGCCCGAA GCATTGGAGA TATCTGGTCT CGCTTTATTT GGTCATGGAT 
    TCTACTTATC CTCGTGTAAC TGTACTTCAA TTAAAAAACT TAAAGGGATA 
    ATGGTTTATC ACTTCTTCTG TCGTCATTTT ACGATTTGCA ATTGTTTACT 
    GTCGTGGAAT TTACTTATTC GCTTCTATAT AATTCGTCTT CTTTCCCGC

    Gene models with high sequence identity

    1. AT4G38630.1 [+] show detail - regulatory particle non-ATPase 10
      E-value: 3e-82; Score: 303.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan von Willebrand factor, type A 10.27
    ProfileScan Ubiquitin interacting motif 10.427
    ProfileScan Ubiquitin interacting motif 9.047
    ProfileScan Ubiquitin interacting motif 8.967
    HMMSmart von Willebrand factor, type A 5.6e-07
    HMMSmart Ubiquitin interacting motif 0.087
    HMMSmart Ubiquitin interacting motif 0.68
    HMMSmart Ubiquitin interacting motif 0.033
    HMMPfam Ubiquitin interacting motif 0.0055
    HMMPfam Ubiquitin interacting motif 0.0072
    HMMPfam Ubiquitin interacting motif 0.00075
    superfamily vWA-like 1.7e-20
    Coil coiled-coil 0
    HMMPanther 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 6.5e-158

    See the detailed result >

    AT4G38630.1

    Model type
    Protein coding
    Short Description
    regulatory particle non-ATPase 10
    Curator Summary
    Regulatory particle non-ATPase subunit of the 26S proteasome with multiubiquitin-chain-binding capabilities
    Computational Description
    regulatory particle non-ATPase 10 (RPN10); FUNCTIONS IN: peptide receptor activity; INVOLVED IN: in 19 processes; LOCATED IN: cytosol, proteasome regulatory particle, base subcomplex, proteasome complex, nucleus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ssl1-like (InterPro:IPR007198), Ubiquitin interacting motif (InterPro:IPR003903), von Willebrand factor, type A (InterPro:IPR002035); Has 677 Blast hits to 665 proteins in 240 species: Archae - 0; Bacteria - 16; Metazoa - 271; Fungi - 148; Plants - 120; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR