K38501

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38501

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38501

Determination of introduced cDNA(s)

J023147F20 - Rice Full-length cDNAs - Original: J023147F20

full reading [+] show sequence

CTGTTGACTC CACCGCTGAG ACTTCCATCT GCCATGACAG GGAGATTTTA 
ACCCTGGTGG GATCACCTTG GAGATTGAAA AAGAAATGCA GAATATTGTG 
CTTGAGAACA AAAGAGAAAA TGTCTTTAAA TAAGCTGTCT GTTAGTAAAT 
CTATGACAGT GCATTGTATC TACTACCTCC ATCCCAAAAT ATTTGGGATT 
TATATGGGCA AAATCCCTTA TATTTTGGGA CGGATGTATT ATCATTTTAT 
TTCTAAAAGA TATAGTCATG TACTTGGAAG AATTCTTGAC CACGAGATGG 
AAAACCTGTA TGCATCCATT CCCATCTCCT TCATAATGCG CACATCTTCC 
TGCAATTTTT TTTGGTGATC AGGCCCTCAG GCCTCAGGAT GAGTACTAAA 
TTAGTCATTT TAAAGAAGAG AATTAAAGTT TTAAGAGATT GTGGCAGAGG 
AAGACTGGCA AACATGGAGT GTATATTTAA TTAAAACCCT TACTCCCTCC 
ATTCCTAAAT GATCTTCGCA TTACCAAAAG TAAAAAGTTT CAATTTGACC 
TTCGTATTTC ATTAGGAAGC AGCAGAAATC ATGGGTAGAC GATAATGGTG 
CTTCGTATTA AGCAGCACTA CATGCATGCA TTGGCTCTGT GAGAGTTAAG 
TTGGGAGCTG CTGCATGCGT GGAATTAATG CATTATAGCT GATTGGCTGG 
TGCATGCGGC ATGCAAAATT GATGAAGCGA CATGCACGGA TAGATGGGAT 
AGTAACTGCT CCTTGGTCTT GCTGCTTAGG TGAAATATGA AGATCATTTA 
GGAATGGAGG GAGTACTAAA GTCAATGCTA GTTGCCAATA CCTTGTAGAG 
ATGGTAGCTA TTGCAAGCAC CATCCCCGTT GCTCTTGTCG GTGATTTTGT 
CTGCCAAATT AGAGAATTGT CAATCCAAAA TAATGTAATG ACCTTTTATT 
TCTGGCCATT TATAGTCAGC ATGCCTGGAT ACTGATGTGT GAAGGTGTCC 
CAGATGCTTG GTCCTCTGCC ACCCTTCGCC GCGGCACCCT CAAACTGCAT 
CATGTGTGAA ACAGCAGTCA ATTTGTCAGG TTTCAGATCT GAAACAGAGC 
ACATCGTGAT GAGATGAGAA GGAATCAGGA AACAGTTAAA TTGACTACTG 
AATACAGTAT TGGATCATGG AATTTCTCTC TACATGCAAA TATGAGCATT 
ATTCTTATTC TTTAGAGAAA TTTCAGCATT TTTCAGTGCC ATCATTTTCT 
GGTTACCTAC ATCAATGAGG TACTCTAGTT GCACAATTTA TCTTAACCTG 
TTCCTTTTTC ATGTGTTTCA TTTGTACATT CTGTTCGTAC TTTTGTTTCC 
CCTTCGAAAA GAACAGTCTG TTCCGACTGT TGTCCTTGCA GAATTTACTT 
TCGGTGGCAG TTTTATGAAA TTCTTCTCGA TTTCTTGTAG GAAGGATGAG 
GTTGGATGCC TGACCTGATA TGACGACGAG GACGTCCCAA AGATGAACCC 
CTTGGGGAAG CTTCTCCGGC TGATCGGCGG CAGCTCGCCG GCGTCATTGT 
AGGCGGCGCA GGTGAAAGCC AAGAGGAGAA GGAGCACGCC ACCTGACATC 
ACCATTGCAC CTGCAACCGC CATGACCTAC ATAGACAGAA AAGAGTGATG 
GGCTGATGAA CACAAACGGT GCCCAACATA TAGCCTCTCG TACATAGGGA 
CTTGCTTAAT ACCATATCAG GATATGTGTT TGGACTTGTG GACAAGGTGG 
GGATAATGGT TTTTCAGAGT GGTGACCACC CTGACAAAAC ACTATCAACA 
CACCCATCAG TAGTCAGTGG GAGTACACTG TTTCCATCCC ATAATAAGTT 
TATTTTTGAT TTCTCTCATT TATCTCAAAA TAAATTCATT TTGAGTAATT 
ATTGTAACAG AGTTTGTGAA AGGAGGAAAT AATTGCATTA GGAGTAATAA 
AGTAGGAAAT AATTGTATTA AGATTAGATA AAATAGGGGT ATTCTAGTTT 
CTTTTGTTTG TATTGGTATG AGTAGTTTGG GTGAAAAATG GACCTATTTC 
G

Gene models with high sequence identity

AT5G42260.1 [+] show detail - beta glucosidase 12
E-value: 8e-07; Score: 29.60

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Glycoside hydrolase, family 1	1.4e-05
HMMPanther	BETA-GLUCOSIDASE	1.7e-09
HMMPanther	Glycoside hydrolase, family 1	1.7e-09
HMMPanther	BETA-GLUCOSIDASE	6.1e-07
HMMPanther	Glycoside hydrolase, family 1	6.1e-07

See the detailed result >

AT5G42260.1

Model type: Protein coding
Short Description: beta glucosidase 12
Computational Description: beta glucosidase 12 (BGLU12); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta glucosidase 13 (TAIR:AT5G44640.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR